RnoEX6035548 @ rn6
Exon Skipping
Gene
ENSRNOG00000016502 | Dscaml1
Description
DS cell adhesion molecule-like 1 [Source:RGD Symbol;Acc:1304887]
Coordinates
chr8:50008309-50009190:+
Coord C1 exon
chr8:50008309-50008508
Coord A exon
chr8:50008858-50008954
Coord C2 exon
chr8:50009062-50009190
Length
97 bp
Sequences
Splice sites
3' ss Seq
TCCTACTGGTCATGTCTCAGCTC
3' ss Score
4.49
5' ss Seq
AAGGTACAT
5' ss Score
7.87
Exon sequences
Seq C1 exon
TCCCAGCCATGATCACGTCGCACCCCAACACCACTATCGCCATCAAGGGCCACGCCAAGGAGCTGAACTGCACTGCGCGTGGCGAGCGGCCCATCATAATCCGCTGGGAGAAGGGGGACACCGTCATTGATCCCGACCGTGTCATGCGGTATGCCATTGCTACCAAGGACAATGGCGATGAGGTGGTCTCCACGCTTAAG
Seq A exon
CTCAAGCCAGCCGACCGTGGGGACTCCGTGTTCTTCAGCTGCCATGCTATCAACTCATACGGAGAGGACCGGGGTTTGATCCAGCTCACTGTGCAAG
Seq C2 exon
AGCCCCCTGACCCCCCAGAGCTGGAGATCCGGGAGGTGAAGGCCCGGAGCATGAACCTGCGTTGGACTCAGAGATTTGATGGAAACAGTATCATCACTGGCTTTGATATCGAGTACAAGAACAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016502-'28-24,'28-23,29-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.212 C2=0.273
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
PF0767911=I-set=PD(31.2=90.9)
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGGGGGACACCGTCATT
R:
ATCTCTGAGTCCAACGCAGGT
Band lengths:
168-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]