HsaEX6004904 @ hg19
Exon Skipping
Gene
ENSG00000177103 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:14656]
Coordinates
chr11:117351158-117352877:-
Coord C1 exon
chr11:117352678-117352877
Coord A exon
chr11:117351889-117351985
Coord C2 exon
chr11:117351158-117351286
Length
97 bp
Sequences
Splice sites
3' ss Seq
CCCTGCTGGTGGTCTCCCAGCTC
3' ss Score
6.09
5' ss Seq
AAGGTACCT
5' ss Score
8.49
Exon sequences
Seq C1 exon
TCCCGGCCATGATCACTTCCCACCCCAACACCACCATCGCCATCAAGGGCCATGCGAAGGAGCTAAACTGCACGGCACGGGGTGAGCGGCCCATCATCATCCGCTGGGAGAAGGGGGACACAGTCATCGACCCTGACCGCGTCATGCGGTATGCCATCGCCACCAAGGACAACGGCGACGAGGTCGTCTCCACACTGAAG
Seq A exon
CTCAAGCCCGCTGACCGTGGGGACTCTGTGTTCTTCAGCTGCCATGCCATCAACTCGTATGGGGAGGACCGGGGCTTGATCCAACTCACTGTGCAAG
Seq C2 exon
AGCCCCCCGACCCCCCAGAGCTGGAGATCCGGGAGGTGAAGGCCCGGAGCATGAACCTGCGCTGGACCCAGCGATTCGACGGGAACAGCATCATCACGGGCTTCGACATTGAATACAAGAACAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177103-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.212 C2=0.273
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(66.7=95.5)
A:
PF0767911=I-set=PD(31.2=90.9)
C2:
PF0004116=fn3=PU(47.1=93.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACACAGTCATCGACCCTGA
R:
TGATGCTGTTCCCGTCGAATC
Band lengths:
178-275
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)