GgaEX7011253 @ galGal4
Exon Skipping
Gene
ENSGALG00000012984 | MYO5B
Description
myosin VB [Source:HGNC Symbol;Acc:HGNC:7603]
Coordinates
chr28:1134094-1134593:-
Coord C1 exon
chr28:1134496-1134593
Coord A exon
chr28:1134285-1134371
Coord C2 exon
chr28:1134094-1134205
Length
87 bp
Sequences
Splice sites
3' ss Seq
CCCTTTCATTTCTGCCCCAGCTT
3' ss Score
7.37
5' ss Seq
CAGGTGCCC
5' ss Score
5.77
Exon sequences
Seq C1 exon
TTCAAATCCTCCCTGCAGCGGCTGATGGAGACGTTGGGCAGCACCACACCGCACTACGTCCGCTGCATCAAACCCAACGACAGCAAGCTGCCCTTCGT
Seq A exon
CTTTGACTCCAGGAGAGCAGTGGAGCAGCTGAGAGCTTGCGGAGTGCTGGAGACCATCCGGATCAGTGCTGCTGGTTACCCCTCCAG
Seq C2 exon
GTGGACATACCAGGAGTTCTTTGAGAGGTACAGGGCCCTGCTGAGCAGGGAGGAGCTGGTGGGTGATGATGCAAAGCAGAGCTGCAGCCTTGCCTTGGAGAGACTGCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012984-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.8=100)
A:
PF0006316=Myosin_head=FE(4.3=100)
C2:
PF0006316=Myosin_head=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAAATCCTCCCTGCAGCG
R:
TTTGCATCATCACCCACCAGC
Band lengths:
173-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]