GgaEX7011587 @ galGal4
Exon Skipping
Gene
ENSGALG00000013515 | SLC4A5
Description
solute carrier family 4 (sodium bicarbonate cotransporter), member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr22:2840728-2841478:-
Coord C1 exon
chr22:2841317-2841478
Coord A exon
chr22:2840989-2841056
Coord C2 exon
chr22:2840728-2840779
Length
68 bp
Sequences
Splice sites
3' ss Seq
CACCTCCGTGTCCTCCCCAGGAA
3' ss Score
10.76
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATTTTAGCCCTGATTCTGGTGCGGCGGCTGCTGGACTTTGTCTTCTCCCAGCATGACCTGGCCTGGATCGACAACATCATCCCCGAGAAGGAGAAGAAGAAGGAAGATGACAAGAAGAAGAAGAAAAAGGGCAACAAAGGGGACAGCAGCAGTGATGAGGAG
Seq A exon
GAAAGAGGTCCTCCGCCCGGAGCTTTGCGTTCTGACTCCTCCCCAAACGGTTCCGACATGGACCGCAG
Seq C2 exon
GACTTTTCAACTATTTTTTCCCAGTAGTAGCAGCATTTGGAGCCCTTCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013515-'31-36,'31-34,32-36=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.407 A=0.696 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTTCTCCCAGCATGACCT
R:
CCATGAAGGGCTCCAAATGCT
Band lengths:
176-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]