RnoEX6014022 @ rn6
Exon Skipping
Gene
ENSRNOG00000010378 | Slc4a5
Description
solute carrier family 4 member 5 [Source:RGD Symbol;Acc:1303009]
Coordinates
chr4:114997946-115002300:+
Coord C1 exon
chr4:114997946-114998030
Coord A exon
chr4:114999022-114999089
Coord C2 exon
chr4:115002153-115002300
Length
68 bp
Sequences
Splice sites
3' ss Seq
ACATCCTCATCTCCCTCCAGGAA
3' ss Score
10.88
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCAATGGAAGGTATCCCATCTGATCCCCAAAACGGTATCCACTGTGTTGGCA
Seq A exon
GAAAAAGATCTTCCAGTTGGAGCCACTCTCTCTGACTCCTCCTTCAGTGCCTCAGAACCAGATAGAAG
Seq C2 exon
CATCACCCTGCATTTCAAAATCTCTTGTCCGGCCTCACCTGCTTTCAGCTACTCACGGAGTCCACTCTTCATGGTGCCACAGGTGAGGATAGAGATGGACTCTGACCTCAACCTCACAGATGACGAGGAGGACTATGGGAGAGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010378-'39-44,'39-41,42-44=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.112 A=0.211 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCTGATCCCCAAAACGG
R:
CCTCCTCGTCATCTGTGAGGT
Band lengths:
169-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]