HsaEX6014005 @ hg19
Exon Skipping
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:HGNC Symbol;Acc:18168]
Coordinates
chr2:74443369-74450079:-
Coord C1 exon
chr2:74449995-74450079
Coord A exon
chr2:74448561-74448628
Coord C2 exon
chr2:74443369-74445919
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCATTTTCCTGCCAGGAA
3' ss Score
9.08
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CCCCAGTTCCCTCCTCCCTCGGTTATAAAGATTCCCATGGAAAGTGTCCAATCAGATCCCCAAAACGGTATCCACTGCATTGCCA
Seq A exon
GAAAAAGATCTTCCAGTTGGAGTTACTCACTCTGATTCTTCCTTCAGTGACACAGAACTTGACCGAAG
Seq C2 exon
CATCACCTTGCACTTCAAAATATCCTGTCCAGCTTCACCTGCTTTCAGCTACTCACGGAACCCAGTGTTCATGGTGCCACAGGTGAAGATAGAGATGGAGTCAGACTATGACTTCACAGACATGGATAAATACCGAAGAGAAACTGACAGTGAGACCACCCTCTAGGATGAAGCAGCTTCTCCCAGATGGGAGATGGAGAGCCTGGCTTAGTCTTCACTGGGAGGGTCTTAACTTCTCTGTGCCTGTTTCCTTCTTTATCAAACAGAGGGAGTCCGTCTGCCTATAGAAAACTGGAGATCTATTGATGAAAAGTATTGCTTAGATGCAAAGCTCTCCCCTTTGTAGTAATTAAAATACCTAAAGCTAAATATTATATTTTATTTTAAAATGCAGTTCAGCATAGAAATTCTAACATTTCTTTGGAAATAAAAAAATGCTTGTTTCCCCAAACCATAGCTAAGATAAAGGGGCAATAGTCAATTCATATTTAAAACAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687-'37-42,'37-41,39-42=AN
Average complexity
A_S
Mappability confidence:
83%=75=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.092 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCTCCTCCCTCGGTTAT
R:
TTCACCTGTGGCACCATGAAC
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)