HsaEX6014005 @ hg38
Exon Skipping
Gene
ENSG00000188687 | SLC4A5
Description
solute carrier family 4 member 5 [Source:HGNC Symbol;Acc:HGNC:18168]
Coordinates
chr2:74216242-74222952:-
Coord C1 exon
chr2:74222868-74222952
Coord A exon
chr2:74221434-74221501
Coord C2 exon
chr2:74216242-74218792
Length
68 bp
Sequences
Splice sites
3' ss Seq
ATTTTTCATTTTCCTGCCAGGAA
3' ss Score
9.08
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
CCCCAGTTCCCTCCTCCCTCGGTTATAAAGATTCCCATGGAAAGTGTCCAATCAGATCCCCAAAACGGTATCCACTGCATTGCCA
Seq A exon
GAAAAAGATCTTCCAGTTGGAGTTACTCACTCTGATTCTTCCTTCAGTGACACAGAACTTGACCGAAG
Seq C2 exon
CATCACCTTGCACTTCAAAATATCCTGTCCAGCTTCACCTGCTTTCAGCTACTCACGGAACCCAGTGTTCATGGTGCCACAGGTGAAGATAGAGATGGAGTCAGACTATGACTTCACAGACATGGATAAATACCGAAGAGAAACTGACAGTGAGACCACCCTCTAGGATGAAGCAGCTTCTCCCAGATGGGAGATGGAGAGCCTGGCTTAGTCTTCACTGGGAGGGTCTTAACTTCTCTGTGCCTGTTTCCTTCTTTATCAAACAGAGGGAGTCCGTCTGCCTATAGAAAACTGGAGATCTATTGATGAAAAGTATTGCTTAGATGCAAAGCTCTCCCCTTTGTAGTAATTAAAATACCTAAAGCTAAATATTATATTTTATTTTAAAATGCAGTTCAGCATAGAAATTCTAACATTTCTTTGGAAATAAAAAAATGCTTGTTTCCCCAAACCATAGCTAAGATAAAGGGGCAATAGTCAATTCATATTTAAAACAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188687-'35-41,'35-40,37-41=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.087 A=0.041 C2=0.200
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCCTCCTCCCTCGGTTAT
R:
TTCACCTGTGGCACCATGAAC
Band lengths:
167-235
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains