MmuEX6005136 @ mm9
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83249420-83253470:+
Coord C1 exon
chr6:83249420-83249504
Coord A exon
chr6:83250465-83250532
Coord C2 exon
chr6:83253320-83253470
Length
68 bp
Sequences
Splice sites
3' ss Seq
GGCTCCTCATTTCCCTCCAGGAA
3' ss Score
9.41
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
CCCCAGTTCCTTCCTCCCTCAGTTGTAAAGATCCCCATGGAAGGTATCCCATCTGATCCCCAAAACGGTATCCACTGTGTTGCCA
Seq A exon
GAAAAAGATCTTCCAGTTGGAGTTACTCTCTCTGACTCCTCCATCAGTGGCTCAGAACTGGATCGAAG
Seq C2 exon
CATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGCTTTCAGCTACTCACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGGAGAGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'31-33,'31-32,33-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.018 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCTGATCCCCAAAACGG
R:
CATAGTCCTCCTCGTCGTCGT
Band lengths:
178-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: