MmuEX6005136 @ mm10
Exon Skipping
Gene
ENSMUSG00000068323 | Slc4a5
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 5 [Source:MGI Symbol;Acc:MGI:2443220]
Coordinates
chr6:83297219-83303476:+
Coord C1 exon
chr6:83297219-83297383
Coord A exon
chr6:83300471-83300538
Coord C2 exon
chr6:83303326-83303476
Length
68 bp
Sequences
Splice sites
3' ss Seq
GGCTCCTCATTTCCCTCCAGGAA
3' ss Score
9.41
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ATCCTGGGCCTTATCATTGTTCGAAGGCTCCTGGACTTGATTTTCTCCCAGCATGACCTGGCCTGGATTGACAATATCCTCCCAGAGAAGGACAAAAAGGAGACAGACAAGAAGAAGAAGAGAAGGAAAGAGGTCCATGAGACGGCAGAGAAGGAGGTGGCAATG
Seq A exon
GAAAAAGATCTTCCAGTTGGAGTTACTCTCTCTGACTCCTCCATCAGTGGCTCAGAACTGGATCGAAG
Seq C2 exon
CATCACCCTGCATTTCAAAATCTCTTGCCCGGCTTCACCTGCTTTCAGCTACTCACGGAGTCCGGTCTTCATGGTGCCGCAGGTGAGGATAGAGATGGAATCTGAGCTCAACCTCACAGACGACGACGAGGAGGACTATGGGAGAGAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000068323-'37-53,'37-51,41-53
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.283 A=0.011 C2=0.404
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000113900fB16972
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGACCTGGCCTGGATTGAC
R:
AAGACCGGACTCCGTGAGTAG
Band lengths:
183-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types