GgaEX7011634 @ galGal4
Exon Skipping
Gene
ENSGALG00000028622 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:HGNC:33631]
Coordinates
chr25:406429-406999:-
Coord C1 exon
chr25:406853-406999
Coord A exon
chr25:406632-406760
Coord C2 exon
chr25:406429-406557
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGGCAGCCCCGTGCCCGCAGAGT
3' ss Score
7.4
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
GGCTGCAGTGCAAGCAGAGCTGCCCGCAGGGCTCCTGGGGCCGAGGCTGCCGCCAGCTCTGCGTGTGCCGCAACGGAGCGTCGTGCTCTCCTGAGGATGGATCATGCACCTGCACCCCAGGCTTCCGTGGCCCCACCTGCCAGCGCC
Seq A exon
AGTGCCCTCCCGGCCGCTACGGAAAGAGGTGTGCACTGAGCTGCTCCTGTGCCAATGGCTCCTCCTGCCACCACGCCACCGGTGCCTGCCTCTGTGCTGCGGGCTGGAGCGGCCCCCACTGCTCCCAGC
Seq C2 exon
CCTGCACACCCGGCTCCTGGGGGGATGCCTGCTCCCAACGCTGCCAGTGTCACCAGAGGGGGACGTGTGACCCGGTCGAGGGGACGTGCCACTGCCCTGCGGGATGGACAGGAAGCAGCTGTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028622-'15-21,'15-20,16-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(47.8=44.0)
A:
PF0005319=Laminin_EGF=PU(68.2=68.2)
C2:
PF0005319=Laminin_EGF=PD(29.5=29.5),PF0005319=Laminin_EGF=PU(67.4=65.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTGCAAGCAGAGCTG
R:
TTCCTGTCCATCCCGCAG
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]