MmuEX0034399 @ mm10
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87751854-87756764:-
Coord C1 exon
chr3:87756552-87756764
Coord A exon
chr3:87753627-87753894
Coord C2 exon
chr3:87751854-87751942
Length
268 bp
Sequences
Splice sites
3' ss Seq
CCATGCGTCCCTTTCCTCAGCCT
3' ss Score
7.09
5' ss Seq
TGGGTATAT
5' ss Score
2.05
Exon sequences
Seq C1 exon
GTGCCAAGAAGAGTGCCCCGTGGGCCGCTTCGGTCAAGACTGTGCTGAGACCTGTGACTGTGCTCCTGGCGCCCGTTGCTTTCCTGCTAATGGCGCGTGTCTGTGTGAACATGGCTTCACAGGCGACCGCTGCACTGAGCGCCTCTGTCCGGATGGCCGCTATGGTCTGAGCTGCCAGGAGCCCTGCACCTGCGACCCAGAACACAGTCTCAG
Seq A exon
CCTGCCCGCCTGGTCGCTATGGCAAACGCTGTGTGCAATGCAAGTGTAACAACAACCATTCTTCCTGCCACCCATCGGACGGGACCTGCTCCTGCCTGGCGGGCTGGACAGGCCCTGACTGCTCCGAGGGTGCGTAGCAGCTTGTGTGGGGCAGTGTGCCCACTGCTTGGGTCGCTGCACTCCGGCTCCTCTCCTGGCCCTGGGCAGAGAGCGTCCCTCCCTCAGTTATCTGTAACATGGGGGGACCCTTCCATCACCTGCAGGCTGG
Seq C2 exon
ATGTCTCTCCGAGCTATAGTCACTACTACTCCAACCCCAGCTACCACACACTGTCTCAGTGTTCTCCTAACCCCCCACCCCCTAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073_MULTIEX1-6/13=C1-10
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.467
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(7.7=1.4),PF0005319=Laminin_EGF=WD(100=61.1)
A:
PF0005319=Laminin_EGF=PU(69.8=68.2)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCAAGAAGAGTGCCCC
R:
CTTGTTAGGGGGTGGGGG
Band lengths:
302-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types