MmuEX0034399 @ mm9
Exon Skipping
Gene
ENSMUSG00000028073 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:MGI Symbol;Acc:MGI:1920432]
Coordinates
chr3:87556630-87558132:-
Coord C1 exon
chr3:87557986-87558132
Coord A exon
chr3:87557688-87557816
Coord C2 exon
chr3:87556630-87556758
Length
129 bp
Sequences
Splice sites
3' ss Seq
CCATGCGTCCCTTTCCTCAGCCT
3' ss Score
7.09
5' ss Seq
AGGGTGCGT
5' ss Score
7.22
Exon sequences
Seq C1 exon
GCACACGCTGCCACCTGCCTTGCCCGGAGGGCTTTTGGGGAGCCAACTGCAGTAACACCTGTACCTGCAAGAATGGTGGTACCTGTGTGTCTGAGAATGGCAACTGCGTGTGCGCACCAGGGTTCCGAGGCCCCTCCTGCCAGAGGC
Seq A exon
CCTGCCCGCCTGGTCGCTATGGCAAACGCTGTGTGCAATGCAAGTGTAACAACAACCATTCTTCCTGCCACCCATCGGACGGGACCTGCTCCTGCCTGGCGGGCTGGACAGGCCCTGACTGCTCCGAGG
Seq C2 exon
CATGTCCCCCAGGCCACTGGGGACTCAAATGCTCCCAACTCTGCCAGTGTCATCATGGTGGGACCTGCCACCCCCAGGATGGGAGCTGTATCTGCACGCCAGGCTGGACTGGACCCAACTGCTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028073-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(47.8=44.0)
A:
PF0005319=Laminin_EGF=PU(69.8=68.2)
C2:
PF0005319=Laminin_EGF=PD(27.9=27.3),PF126612=hEGF=WD(100=29.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTTGGGGAGCCAACTGC
R:
CAAGCAGTTGGGTCCAGTCC
Band lengths:
242-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: