RnoEX0064786 @ rn6
Exon Skipping
Gene
ENSRNOG00000014243 | Pear1
Description
platelet endothelial aggregation receptor 1 [Source:RGD Symbol;Acc:1305653]
Coordinates
chr2:187117690-187119214:-
Coord C1 exon
chr2:187119068-187119214
Coord A exon
chr2:187118772-187118897
Coord C2 exon
chr2:187117690-187117818
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCATGTGTCCCTTTCCTCAGCCT
3' ss Score
7.7
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
GCACACGTTGCCACCTGCCTTGCCCAGAGGGCTTTTGGGGAGCCAACTGCAGCAATGCCTGTACCTGCAAGAATGGTGGCACTTGTGTACCTGAGAACGGCAACTGTGTGTGCGCACCAGGGTTCAGAGGCCCCTCCTGCCAGAGGC
Seq A exon
CCTGCCCGCCTGGTCGCTATGGCAAACGCTGTGTGCCCTGCAAGTGCAACAACCATTCTTCCTGCCACCCGTCGGATGGGACCTGCTCCTGCCTGGCAGGCTGGACAGGCCCTGACTGCTCTGAAT
Seq C2 exon
CATGTCCCCCAGGCCACTGGGGACTCAAATGCTCCCAACCCTGCCAGTGTCATCATGGTGCCACCTGCCACCCCCAGGATGGGAGCTGTGTCTGCATCCCAGGCCGGACTGGACCCAACTGCTCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014243-'23-27,'23-26,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PD(47.8=44.0)
A:
PF0005319=Laminin_EGF=PU(63.0=67.4)
C2:
PF0005319=Laminin_EGF=PD(34.8=36.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTTGGGGAGCCAACTGCAG
R:
CTTCCGAGCAGTTGGGTCCAG
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]