HsaEX0046535 @ hg19
Exon Skipping
Gene
ENSG00000187800 | PEAR1
Description
platelet endothelial aggregation receptor 1 [Source:HGNC Symbol;Acc:33631]
Coordinates
chr1:156880026-156882167:+
Coord C1 exon
chr1:156880026-156880172
Coord A exon
chr1:156880410-156880535
Coord C2 exon
chr1:156882039-156882167
Length
126 bp
Sequences
Splice sites
3' ss Seq
CATGTACCCCTTTCCCCCAGCCT
3' ss Score
7.11
5' ss Seq
AGCGTATGT
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTGCCCGCTGCCACCTGTCCTGCCCTGAGGGCTTATGGGGAGTCAACTGTAGCAACACCTGCACCTGCAAGAATGGGGGCACCTGTCTCCCTGAGAATGGCAACTGCGTGTGTGCACCCGGATTCCGGGGCCCCTCCTGCCAGAGAT
Seq A exon
CCTGTCAGCCTGGCCGCTATGGCAAACGCTGTGTGCCCTGCAAGTGCGCTAACCACTCCTTCTGCCACCCCTCGAACGGGACCTGCTACTGCCTGGCTGGCTGGACAGGCCCCGACTGCTCCCAGC
Seq C2 exon
CATGCCCTCCAGGACACTGGGGAGAAAACTGTGCCCAGACCTGCCAATGTCACCATGGTGGGACCTGCCATCCCCAGGATGGGAGCTGTATCTGCCCCCTAGGCTGGACTGGACACCACTGCTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187800_MULTIEX1-2/2=1-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=6.0),PF0005319=Laminin_EGF=PU(72.3=68.0)
A:
PF0005319=Laminin_EGF=PD(25.5=27.9),PF0005319=Laminin_EGF=PU(65.9=67.4)
C2:
PF0005319=Laminin_EGF=PD(31.8=31.8),PF126612=hEGF=WD(100=29.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGGCTTATGGGGAGTCA
R:
TAAGCAGTGGTGTCCAGTCCA
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)