DreEX6041448 @ danRer10
Exon Skipping
Gene
ENSDARG00000060753 | pear1
Description
platelet endothelial aggregation receptor 1 [Source:ZFIN;Acc:ZDB-GENE-091230-1]
Coordinates
chr16:30547395-30550463:+
Coord C1 exon
chr16:30547395-30547541
Coord A exon
chr16:30547628-30547759
Coord C2 exon
chr16:30550335-30550463
Length
132 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCCTCTACTTCATAGTGT
3' ss Score
7.66
5' ss Seq
AAGGTTAGA
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTGTGCGCTGTACACAGCAGTGTCCAGAAGGAACATGGGGAATTCAGTGCAACCAGACCTGCTCCTGCCTCAACAGCGCCACCTGTCAGGCACATACAGGAACCTGCTTGTGCAAACCGGGATTTTGGGGAGCTCAGTGTCAACACA
Seq A exon
TGTGTAGTGCTGGTCTGTTTGGAGAAAAGTGCAGTCGTCATTGCCCACCATGTGTCCACGCCTCCTCCTGCCATCACATTACAGGAGATTGTCAGTGTTTGTCTGGATATACTGGACCATTGTGTGAACAAG
Seq C2 exon
CTTGTCCCGTTGGTCGATACGGAAGCCATTGTAGCAATGTGTGCAGGTGCACCAATAATGCAACATGTCATCACGAGGTTGGTTTGTGCATCTGTCCTGCTGGATGGACTGGATCAGACTGCTCTTTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060753-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126612=hEGF=PD(23.1=6.0)
A:
PF126612=hEGF=WD(100=28.9)
C2:
PF126612=hEGF=WD(100=29.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACATGGGGAATTCAGTGC
R:
AGAGCAGTCTGATCCAGTCCA
Band lengths:
244-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]