GgaINT0007722 @ galGal3
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
NA
Coordinates
chr15:1074553-1075368:-
Coord C1 exon
chr15:1075257-1075368
Coord A exon
chr15:1074644-1075256
Coord C2 exon
chr15:1074553-1074643
Length
613 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ACCTAATTTTTGTTTTGAAGTCT
3' ss Score
5.57
Exon sequences
Seq C1 exon
CCAGTCTCCTCGAGAAACAAAAGCAGCGTCTCACGTTCTTCAGATGATCTGGAGCTACAAGGAGTTACGAAATGCTTTGCAGAAAGATGGCTGGAACAAATCACACTTCCAG
Seq A exon
GTAAAGATGTCGGGTCTTAGGTTTAGTTAGTAGTTATGAAATACCTGAGTGGAAGGTGCCCTCTCTTAATGTAATACTAATGTCTGATAGATTACATGCTTTGAATCTGTTCTTCTGGGTAATGGAAAAATGTGTTGTAACCTATTCAGTCATAACATCATGCACATACTTCATGGATAGGTTTTTTGCTGGTCTATGAAATGTAGCTTTTTAGTTTTTGAAAGTATGCCATGCTGTGTAGCCCAAATGTGTGGGCTTTGCTCAAGGAAGGATCAGCATGTCTTTTCTCAACTGTTTTTTTTCTCATATGAAATCTATTTCAGGCAGCAGTCCAGAGCAGTCACTAGTTCTTGACGTGCAGCCTCCTTACCTTCCCTTCTGAAAAGGTTGAGCTCCTTTTACAGACCAACAGTGCAGCCATCTAGATAATACACACACAAAAAAATTTCCACTAACAAATCTGTATGAAAATATTAAAAAAAAAAACTCCACTGCCATGCTATCAACAGGAGGGGATTTAGAAGCAATAGGTGATCTTGCTTCATACTGCTTATTTTACTTGTTTGATTTCCCTGAACAGCAGTTTCATATTTACCTAATTTTTGTTTTGAAG
Seq C2 exon
TCTGTTTCTGCAACTCCAAAGAGTTCCAAAGGTACTGCTGGCAGGTCTGGCTATGATGACAGCACTTTGCCGCTGGTGGATAAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.444 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0278111=G6PD_C=PU(31.4=69.6)
A:
NA
C2:
PF0278111=G6PD_C=FE(58.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCTCGAGAAACAAAAGCA
R:
GACTTTTATCCACCAGCGGCA
Band lengths:
198-811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]