BtaINT0021837 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001473 | ARVCF
Description
Bos taurus armadillo repeat gene deleted in velocardiofacial syndrome (ARVCF), mRNA. [Source:RefSeq mRNA;Acc:NM_001105380]
Coordinates
chr17:74931448-74931744:-
Coord C1 exon
chr17:74931633-74931744
Coord A exon
chr17:74931539-74931632
Coord C2 exon
chr17:74931448-74931538
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGG
5' ss Score
6.25
3' ss Seq
TATGTGTTCCCCCGCCGCAGTCA
3' ss Score
7.45
Exon sequences
Seq C1 exon
CCAATCGGTGCGCGAGGCGAAGGCCGCGTCGCACGTGCTGCAGACCGTGTGGAGCTACAAGGAGCTGCGCAGCGCCCTCCAGAAGGACGGCTGGAGCAAGGCGCGCTTCCAG
Seq A exon
GTTAGGCCCGCCCGCCCCTTCTCACTTCGCCAGGCCTGGTCTCCTGTGGCAGCGCCCCGACCCACGCCGTCTGCTATGTGTTCCCCCGCCGCAG
Seq C2 exon
TCAGCCGCTGCTAATGCCAGGGGCCCCAAGGCAGCCCCGAGTCCGGGAGGCTTGGACGACAGCACGCTGCCGCTGGTGGAAAAGAGCCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001473:ENSBTAT00000001929:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.105 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCAGACCGTGTGGAG
R:
CCAGGCTCTTTTCCACCAGC
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development