RnoINT0021502 @ rn6
Intron Retention
Gene
ENSRNOG00000001888 | Arvcf
Description
ARVCF, delta catenin family member [Source:RGD Symbol;Acc:1306655]
Coordinates
chr11:86738409-86738705:-
Coord C1 exon
chr11:86738594-86738705
Coord A exon
chr11:86738497-86738593
Coord C2 exon
chr11:86738409-86738496
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGTGTTTTGTGCCTTCTTAGTCT
3' ss Score
8.28
Exon sequences
Seq C1 exon
CCAGTCAGTGCGGGAGGCCAAGGCAGCATCACACGTGCTACAGACTGTGTGGAGCTACAAGGAGCTGCGTGGAGCCCTACAGAGGGACGGCTGGACGAAAGCACACTTCCAG
Seq A exon
GTACAGCTGCCCCGCCTTATCTCTCACTTTGCTATGTCTGACTCTGAGCAGGAGTGTCTTGGGCCTCACCTCTTCTTTGTGTTTTGTGCCTTCTTAG
Seq C2 exon
TCTGCTAGCACTGCCAAAGGACCCAAAGGGACACCAAATTCTGGAGGCTTTGATGACAGCACACTGCCACTGGTAGACAAGAACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001888:ENSRNOT00000044635:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACACGTGCTACAGACT
R:
TTGTCTACCAGTGGCAGTGTG
Band lengths:
167-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]