MmuINT0019419 @ mm9
Intron Retention
Gene
ENSMUSG00000000325 | Arvcf
Description
armadillo repeat gene deleted in velo-cardio-facial syndrome [Source:MGI Symbol;Acc:MGI:109620]
Coordinates
chr16:18403721-18404014:+
Coord C1 exon
chr16:18403721-18403832
Coord A exon
chr16:18403833-18403926
Coord C2 exon
chr16:18403927-18404014
Length
94 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAG
5' ss Score
8.68
3' ss Seq
TGTGTTTTGTGACTCCTCAGTCT
3' ss Score
7.14
Exon sequences
Seq C1 exon
CCAGTCAGTGCGGGAGGCCAAGGCAGCATCACACGTGCTACAGACTGTATGGAGCTACAAGGAGCTGCGTGGAGCCCTGCAGAGGGATGGCTGGACGAAGTCACGCTTCCAG
Seq A exon
GTACAGCTGCCCCGCCTTCTCTCTTACTTTGTCACGTCTGATCCCAAGCAGTTTCTTAGGCCTTAACTCTTGCTTGTGTTTTGTGACTCCTCAG
Seq C2 exon
TCTGCTAGCACTGCCAAAGGACCCAAAGGGACACCAAGTTCTGGCGGCTTTGATGACAGCACACTGCCACTGGTAGACAAGAGCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000325-Arvcf:NM_033474:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.989
Domain overlap (PFAM):
C1:
PF0245312=Reticulon=PD(4.2=7.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATCACACGTGCTACAGACT
R:
GCTCTTGTCTACCAGTGGCAG
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: