GgaINT1006765 @ galGal4
Intron Retention
Gene
ENSGALG00000002040 | ARVCF
Description
armadillo repeat gene deleted in velocardiofacial syndrome [Source:RefSeq peptide;Acc:NP_989796]
Coordinates
chr15:1057732-1058547:-
Coord C1 exon
chr15:1058436-1058547
Coord A exon
chr15:1057823-1058435
Coord C2 exon
chr15:1057732-1057822
Length
613 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
ACCTAATTTTTGTTTTGAAGTCT
3' ss Score
5.57
Exon sequences
Seq C1 exon
CCAGTCTCCTCGAGAAACAAAAGCAGCGTCTCACGTTCTTCAGATGATCTGGAGCTACAAGGAGTTACGAAATGCTTTGCAGAAAGATGGCTGGAACAAATCACACTTCCAG
Seq A exon
GTAAAGATGTCGGGTCTTAGGTTTAGTTAGTAGTTATGAAATACCTGAGTGGAAGGTGCCCTCTCTTAATGTAATACTAATGTCTGATAGATTACATGCTTTGAATCTGTTCTTCTGGGTAATGGAAAAATGTGTTGTAACCTATTCAGTCATAACATCATGCACATACTTCATGGATAGGTTTTTTGCTGGTCTATGAAATGTAGCTTTTTAGTTTTTGAAAGTATGCCATGCTGTGTAGCCCAAATGTGTGGGCTTTGCTCAAGGAAGGATCAGCATGTCTTTTCTCAACTGTTTTTTTTCTCATATGAAATCTATTTCAGGCAGCAGTCCAGAGCAGTCACTAGTTCTTGACGTGCAGCCTCCTTACCTTCCCTTCTGAAAAGGTTGAGCTCCTTTTACAGACCAACAGTGCAGCCATCTAGATAATACACACACAAAAAAATTTCCACTAACAAATCTGTATGAAAATATTAAAAAAAAAAACTCCACTGCCATGCTATCAACAGGAGGGGATTTAGAAGCAATAGGTGATCTTGCTTCATACTGCTTATTTTACTTGTTTGATTTCCCTGAACAGCAGTTTCATATTTACCTAATTTTTGTTTTGAAG
Seq C2 exon
TCTGTTTCTGCAACTCCAAAGAGTTCCAAAGGTACTGCTGGCAGGTCTGGCTATGATGACAGCACTTTGCCGCTGGTGGATAAAAGTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002040:ENSGALT00000003170:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.447 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCTCCTCGAGAAACAAAAGCA
R:
GACTTTTATCCACCAGCGGCA
Band lengths:
198-811
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]