GgaINT0010692 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2609912-2611589:-
Coord C1 exon
chr20:2611486-2611589
Coord A exon
chr20:2610056-2611485
Coord C2 exon
chr20:2609912-2610055
Length
1430 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGC
5' ss Score
7.47
3' ss Seq
CCTCCATGTCACTCTGGCAGACG
3' ss Score
7.43
Exon sequences
Seq C1 exon
GGAAGAAGCGTGCTTGGATCCCGGATGAGAAAGAAGCTTACATTGAAGTGGAAATCAAAGAAAGCACTGGTGGCAAAGTCACTGTGGAAACTAAAGATAAGCAA
Seq A exon
GTAAGCAAAATACCTTTCCTTTTCCAAGGGCCTGCAACTATGTGTGGAGGGGGGATATGTGTGACAAGATCACGTCTGAACCTAGCCAAGCTGTCCCTGAGAACCCATCCCCACTCGGCACTCAGTTGTCCCCCGAGGGCTGCCCATGGGTTTGTCACTGTGCAATGTCAGCACACTGTAGGCCAAGGACTCCCCGAGCGTGCCAACCGCTCAGCATCCCCCACCAAATGTTTCAAACCGGGTGTACTGGGCCAGGAGGGAGAAGGGGACAGCAGTCAGCTCCGGCACAGCCCATTGCAATGCTGAATCCTTGCCTTGCTAATCCTGGAGGTAAAAACCAGAGGTAAGGAGACAGGTCTTGTTTGTTTTAGCCTGGATTTGCAGTAGATTAAGCAGTACTGATTGGGGAACAAAGAACAGGCAAAGAACAACATCCATTACAAATAGCTGCAAATGAGCTTAATTAATATCTCCTTCTCAGCTATGTGAAGTGCATGGCAACACTGCTGCCATGCAGAGATTCTCACTGGTATAAAATGGGGAAAAAGAACCAGGTGCTGACCTGGCAGTAGCCGGTAGATGTGGCTATGTTTGTTTCTCAGCTAGATTTCATGGCACTGAGAACTGCTTGTGTCTGCCTAACTCAACTACATCTAATTGCCTTTGAAATGTGCCAAGGTTTTGGAAAGGTTTTTGTCTGAAATTGGAGAAAAAAATAATAATAATAAAAAAAATTCCTCCTATGAAAGGTAACTTGCTGCGGAGGGAGCATCAATTAGAAATCCTACTTTGCCTTTTTAAATGCTTTGGTTCAAGATCTTCAGATTCTGCAAACAAAGCAGTTTCTAAACCCTCCTGAAACTGTTTGTGTTAAAATTTGTCATGGATTTGCAAAACCCGAGGCTATACCTGCTGCCTCTGGATCTCACTTCCAACAGAAACAGTTTCAAGAGACAAACCGCACTCCTGTTCTTCCATCCGTTTCCCTTCTGTTAACATCCAACACCTTTCAACACCCCGTGCTTAATGCTCACCTATTAAAAAACAAAAATCTCGCAGAGATTTTGCTTCAGATGCATTAACAAGCCCATTTGCTAAATCCAGGTCCTTGCATCCAGATATGTAAGGTGATAGTTCCCCAAGGCTGGGATTTGCAGGATTAAATGGATCCAGCTTGAAGTGGTGGGGTATGCACTTCAGCTGTTGGCCCAAATAACCACAGACCTCTTTGATAGGACAAGGGGTGCTGAGCACTATATAGGGGCTGTGGCTGTTCCCCTGTCTCAAGGATGGCACCCCAAGGAGGGCAGGAGGATCCCATGGGGCAGAGGTGGCACTCTCAGAGAAAGGTCTCCATAGTGGAGCTGGGAAGATGTAGGGCTGGAGGCTGCACCGGGTCCAAGCCCAATGCCTCCATGTCACTCTGGCAG
Seq C2 exon
ACGCGGGTGGTGAAGGAAGATGAGCTGCAGGCCATGAACCCCCCCAAGTTCGACATGATTGAAGACATGGCCATGCTGACGCATCTCAACGAGGCCTCCGTGCTCTACAACCTCAAGCGCCGCTACTCCCACTGGATGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.257 A=NA C2=0.125
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(78.6=94.3)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGCGTGCTTGGATCCC
R:
TCCAGTGGGAGTAGCGGC
Band lengths:
239-1669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]