RnoINT0096559 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151128285-151128711:+
Coord C1 exon
chr3:151128285-151128391
Coord A exon
chr3:151128392-151128567
Coord C2 exon
chr3:151128568-151128711
Length
176 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGAG
5' ss Score
1.33
3' ss Seq
GTGACACATCTCCTCGGAAGGTG
3' ss Score
3.46
Exon sequences
Seq C1 exon
GCAAGAAACGGGTCTGGGTGCCTGATGAACAGGATGCCTATGTCGAAGCTGAGGTCAAGACTGAAGCTACTGGAGGCCGAGTCACTGTGGAGACCAAAGACCAGAAG
Seq A exon
GTTGAGCTTTCCCCTTCCTTGAGATTAACCCCTCTGACCCTAGGTGCATCTCCTGGCCAGCTGGATCCACAGAAAGAATGAAGCGGACTGGTGCATGGGAGTGTGTGGGTAGGAGAGAGAGGAAAGGTCAGGTCACCCATCTCTGTTCCTCACCGTGTGACACATCTCCTCGGAAG
Seq C2 exon
GTGCTGACAGTGCGTGAAACGGAAATGCAGCCCATGAACCCACCCCGCTTCGACTTACTGGAGGACATGGCCATGATGACGCACCTCAACGAGGCTGCAGTGCTGCACAACCTGCGCCAGCGTTATGCTCGCTGGATGATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(79.1=94.4)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAAACGGGTCTGGGTGC
R:
AGATCATCCAGCGAGCATAACG
Band lengths:
248-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]