MmuINT0103626 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155438884-155439312:+
Coord C1 exon
chr2:155438884-155438990
Coord A exon
chr2:155438991-155439168
Coord C2 exon
chr2:155439169-155439312
Length
178 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGAG
5' ss Score
1.33
3' ss Seq
GTGACACATCTCCTCGGAAGGTG
3' ss Score
3.46
Exon sequences
Seq C1 exon
GTAAGAAACGGGTCTGGGTGCCTGATGAGCAGGATGCCTATGTGGAGGCTGAGGTCAAGACTGAAGCTACTGGAGGCAAAGTCACTGTGGAGACCAAAGACCAGAAG
Seq A exon
GTTGAGCTTCCCCTTCCTTGATATTAGCCCCTCTGACCCTGGGTGCATCTCCTGGCCAGCTGGATCCACAGAGTGAATGAAGCGGCGTGGGGCATGGGAGTGTGTGCGGGGAGGAGAGAGAGGGAAGGTCAGTTGGCCCCATCTCTGTTCCTTACCATGTGACACATCTCCTCGGAAG
Seq C2 exon
GTGCTGACAGTGCGTGAAACGGAGATGCAACCCATGAACCCACCCCGTTTCGACTTACTGGAGGACATGGCCATGATGACGCACCTCAACGAGGCTGCAGTGCTGCATAACCTGCGGCAGCGCTATGCTCGCTGGATGATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.306 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(79.1=94.4)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAAGAAACGGGTCTGGGTGC
R:
GATCATCCAGCGAGCATAGCG
Band lengths:
248-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: