BtaINT0097362 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64889984-64890390:+
Coord C1 exon
chr13:64889984-64890090
Coord A exon
chr13:64890091-64890246
Coord C2 exon
chr13:64890247-64890390
Length
156 bp
Sequences
Splice sites
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
3' ss Seq
CGATATGGCCTTCCTGGCAGGTG
3' ss Score
8.29
Exon sequences
Seq C1 exon
GGAAGAAGCGGGTCTGGGTACCTGATGAACAGGATGCTTACGTGGAGGCTGAGATCAAGTCGGAAGCCACTGGGGGCAGAGTCAACGTGGAGACCAAAGACCAGAAG
Seq A exon
GTTTGGCTCCCCCCTTTTCCTGGAATTAGCTCCTCTGCCTCCCGGAGGTGTAGCTCCTGGAAGGCATGCTCTGGATGAAAGGGGGTCTGGGGGTGTACAGGGGTGAGAGGCTGAGGTCACTTGGTTCCTGCCCCCACGATATGGCCTTCCTGGCAG
Seq C2 exon
GTGCTGACGGTTCGCGAGGCTGAGCTGCAGCCCATGAACCCGCCCCGCTTCGACTTGCTGGAGGACATGGCCATGATGACGCACCTCAACGAGGCATCCGTACTGCACAACCTGCGCCAGCGTTATGCTCGCTGGATGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.062
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(79.1=94.4)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(29.8=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAGCGGGTCTGGGTA
R:
AGATCATCCAGCGAGCATAACG
Band lengths:
249-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development