HsaINT0107915 @ hg38
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:34979390-34979804:+
Coord C1 exon
chr20:34979390-34979496
Coord A exon
chr20:34979497-34979660
Coord C2 exon
chr20:34979661-34979804
Length
164 bp
Sequences
Splice sites
5' ss Seq
AAGGTTCCG
5' ss Score
0.08
3' ss Seq
TGACACGATCTCCCTGGTAGGTG
3' ss Score
7.65
Exon sequences
Seq C1 exon
GGAAGAAGCGAGTCTGGGTGCCTGATGAACAGGACGCCTACGTGGAGGCCGAGGTCAAGTCGGAGGCTACCGGGGGCAGAGTCACCGTGGAGACCAAAGACCAGAAG
Seq A exon
GTTCCGTTCCCCCTTTCCTGAGATTAGCCTCTCTGTCCCTAGGCCTCCTGGCCAACAGGATCTGCCCTCTGGTTGAAGGGGGTCTGGGTATGTGGGTGGGGGTGACAGGTGAGGTCGGTCGGTTCCTCCCGGTCCCCCGGCCCCTGACACGATCTCCCTGGTAG
Seq C2 exon
GTGCTGATGGTGCGTGAAGCCGAGCTGCAGCCCATGAACCCGCCTCGCTTCGACTTACTGGAGGACATGGCCATGATGACGCACCTGAACGAGGCCTCTGTGCTGCACAACCTGCGCCAGCGCTATGCCCGCTGGATGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814:ENST00000262873:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(79.1=94.4)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.3=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAAGCGAGTCTGGGTGC
R:
GATCATCCAGCGGGCATAGC
Band lengths:
247-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development