GgaINT0012585 @ galGal3
Intron Retention
Gene
ENSGALG00000009217 | TBC1D24
Description
NA
Coordinates
chr14:14675982-14678692:-
Coord C1 exon
chr14:14678458-14678692
Coord A exon
chr14:14676265-14678457
Coord C2 exon
chr14:14675982-14676264
Length
2193 bp
Sequences
Splice sites
5' ss Seq
TAGGTAAGT
5' ss Score
9.66
3' ss Seq
TCGGGATTTTCTCTCCCCAGGAG
3' ss Score
8.08
Exon sequences
Seq C1 exon
CTGCAACCAGAAGTGGAACGCTACGAGTGGGTGATCATAAAGCACCCAGAATTGGCTGCAAGTGGTTCTGAGCCAGAAAATCATGCCTCGCCAGCTTCCAACGCCCTCTCCTTCAGAAGCACCCCCTCAGACCCATCAGATCGCCTTTCTCCCTTCTTATCAGCTCGGCACTTCAACTTACCGTCCAAAACAGCTTCCATGTTCATGGCTGGCAGCAGTGAATGCATCATTATAG
Seq A exon
GTAAGTCAGTGTGAGAATTTGAGCGTGTATTCCACACACCAGCTTTTATCACTCCTATTAGGTGAGAGAGTCCCATTTATTTACCATATATGCATTTCAGTATTATTAGTACTATTAGTATTATTATTTAGAGAGGAAAAGTTGCCAAAACGTGGTATTACCCAACAAGAGCTTTCCTTGGGAAACTTGCATAAGGTGCATTTTAAGTAAGATCTTAGATAGTAACTCGTAGCTTTAAGCACAGCAATACCTTCAACCTGCATGGTTATCAGAAGTAGTTCTTGAAGAGGAACTTAGTTTGCACTGAGGACTTTGCCTCGTAGGGTAGAATGTGAAGCACATTCATTCTTCTGGAGCTGTATTAGATCTGTGATGATACTGACTTTGGTGAAAGCCTGCTTAGTAAAGTTGTCACCTAAATGGTGGCAGATATAGAAGTGTAGCTGTCCTTCTCCCAGAAAGCTTGACTTGGCACATGTTAGGAGTGCAGCTAGCCCAGTGATTTAATCAGTGCCATCAAATGCCTGCTGATTTTCCACTTAGCATCACATGCACTAGTCAGCTGTAAGTTGGGCTGCTCCACTATCAGCTAAGCTTGTGAAATGCAAATGTAATTGAATGGGAAAGCACTGATAATTATAAATCACAGGTATTTGAGAGGTCTTAACTGCTCACTGTAGGTAGTAATAAGAGAAATACAAGCATGAGCAGTAGCTACAAAGAAATGAATGTTGTACATAACCCAGCTGTCGATGAGACTTTCTACCCTTTTGATGCTTCAGGTGGTTTTTGTAGCTTGCACAGCTGCCCTAAAGGCAGTAGGGAAATCTTTCCTTTTGTTTTCCCAGCATATTTGTCTCTCAATCTATTTCACTCTACTGCATCTCTGGCCATAAGCTCTGTGAATATTGACAGACAGATAATGAAAATGCAGTTTGCTTTGATGTGTTCTATCATGATTAAGAATACCAAGCCAGTGCTGTTGCTTCTCAGTCTTCTTCTTCTCCTAGCTTTGATTTTGGTTGCTTAGTTCCCTCAGTTTTTCTTCACGGAGGGAAAATGTGCAGCTGGTGGCTCCCAGGATTATCCAGCACTGGAAGACAGGTCTTAAAAGCAGGAAATTGAGTCAGTCAGTTTTCTTAATGAACTGCATGGATCTATTTTAAAAACCTTATTCTGATACTGTCACTGAAAAGCAATGAATTTGAGCTTATTCTGTTATACCTGAGGACAACAAGCAAACATCACTTAGGACATGGATGTCCAACCTTTTGGCTTGCCTGGGCCGCCCTGAGCAAAGAAAAATTGTCTTGGGCCACAGTTTCGTTGTCTTCTATTAATTTTCTAAGTCTCCCTTTTTTAATTACCAACCATTGCTGGGTGCCATCAGTAGCTGTACCAGACACGTTGACAAAGGTTAAAGAAAATCACTTCAATGTATTTTTTTTTTTTTCACTGCTTCATACAAATCAAGAGATAGGGTTGTGTCTTATAATGGCATCAAAGCAGCCATTGCTTCAGTGATGTGATGGTTGTTATCAGTGGTACGAATGGTGAGTTGGGCCATAGCTGTAGCATCGGTACCTTCGTCTATTGCCAAAGCACAGCATTGGAAATGAGCAGCTTTCATCTCCAAATTTCTTCCAGTAGATTTTGCTGCTGCTTTGGTTTGCCCGGCTACGGTCTGGTGAGGCAAGCTGGTGTTAGGGAAATCTGTGCTTTTTATCAGGACAGATTATATCTGCCACACTTTCCACACATTGCCTCATAAACTCACCATCTGTAAATGGTCTTCGGTGTTTTGCAGTCAGATTTGCTGCCACAGAACAAGCTTTTATAGCAGAGTCTGTTTGAGTTTTGACTTTAAAAAGATGTTGAGATAAGACTTTTGTTCATTTTCGCTGCTCTGGCCTTAGGAAGCGTTCCTTGATATTCATCAGATTTGGCAGCATGTGTTGGCATATAATGTCTTTTCAAACTGTAATCTTTGAAAACTGACATGATTTCCTTGCAAGTTATGTGTAGTGACTTATTTGTCTGAACGAAAAGGTGCTCATCTGTCCGTTTTTGTTGAACTCTCACCTGTTGGACACGCCTGATTTAGGGCGTCTGGTGTTTAAATCAGCTTGTTCAACAGTTTCTCATCCCAAGAAATGCAAAGACAGCTTTTTACTCGGGATTTTCTCTCCCCAG
Seq C2 exon
GAGGCGGTGATGGCCAGGCTCTTTACCTCGATGCAGACCTGAACCATGGAAGGACAAGCCACTGCGACACTTTCAACAACCAACCGCTGTGTTCCGAAAGCTTCCAGATCTCTGTCTTGGAGGTGTGGGGCTTCAGGGACACCGTGAATGGCTGACACGACTCTCACTATTCAGCTAGATTTTCAGTTGTCCTAGGATTCCCAAGGCAAATTGTAATGCAGGAGCCAAGTTAGAGCATAATTCCCACTGGACTTGGTGTTCATTAATAATTACTAAGCAGTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009217:ENSGALT00000015002:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.228 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0753411=TLD=PD(37.0=50.6),PF0753411=TLD=PU(43.9=45.6)
A:
NA
C2:
PF0753411=TLD=PD(54.9=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]