RnoINT0148083 @ rn6
Intron Retention
Gene
ENSRNOG00000052204 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:RGD Symbol;Acc:1306143]
Coordinates
chr10:13553626-13554361:-
Coord C1 exon
chr10:13554130-13554361
Coord A exon
chr10:13553801-13554129
Coord C2 exon
chr10:13553626-13553800
Length
329 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGGC
5' ss Score
3.03
3' ss Seq
GTCACCTGCGCATCCCACAGGGG
3' ss Score
7.67
Exon sequences
Seq C1 exon
CTGCAGCCGGAGGTGCAGCGCTATGAGTGGGTGGTCATCAAGCACCCAGAACTGACCAAGGCAGCATCCTTCAAGTCCTCAGAGGCTGCAGCCAATCCTTGCCTCATCAGCCACTCCGTCTCTTCAGACCCTGCCGACCGGCTCTCTCCTTTCCTGGCTGCCCGGCACTTCAACCTGCCCTCCAAGACCGAGTCCATGTTCATGGCTGGGGGCAACGACTGCCTCATCATTG
Seq A exon
GTGGGCACCTGTTTCCTTCACCCCAGTCTGGGTCCTACCCATGCTCGGAGGGGGTTTGTGGGCAGCTGAAGCCTCTGTGCCCGGTCCCTGTTGACTGGTAGCAGTAGACATCTCAGCAAAGGACCTGGGTTGTTTGTGGGTAGAGATAGGACCTAAGGGCTAGGAAGCATGCATTAGGTGGGGAGCCAGGCCCAGAGGAACCTCTGTCGTCTGGGGGGGGTCTATTTCCTGAGAGTGCTGCTTCGTAGACTCTCTGAGGACAGAAACGTTGGGTATCTAGGGAAGTGGTTGTTGGAGCAGAAAGGCATGGTCACCTGCGCATCCCACAG
Seq C2 exon
GGGGAGGAGGTGGCCAAGCACTCTACATCGATGGGGATCTGAACCGAGGGCGCACCGGACACTGTGACACGTTCAACAACCAGCCCCTGTGCTCGGAGAGCTTCCTCATCGCGGCCGTGGAGGCTTGGGGCTTCCAAGACCCCGACACCCAGTGACTGACGGGCCCGCGCTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052204:ENSRNOT00000081995:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.039
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(40.5=100)
A:
NA
C2:
PF0753411=TLD=PD(23.7=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACTGACCAAGGCAGCAT
R:
TCAGTCACTGGGTGTCGGG
Band lengths:
345-674
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]