HsaINT0164155 @ hg19
Intron Retention
Gene
ENSG00000162065 | TBC1D24
Description
TBC1 domain family, member 24 [Source:HGNC Symbol;Acc:29203]
Coordinates
chr16:2550269-2553488:+
Coord C1 exon
chr16:2550269-2550491
Coord A exon
chr16:2550492-2550804
Coord C2 exon
chr16:2550805-2553488
Length
313 bp
Sequences
Splice sites
5' ss Seq
TCGGTGAGC
5' ss Score
9.1
3' ss Seq
CTGACCTGAGCATCCTGCAGGGG
3' ss Score
1.09
Exon sequences
Seq C1 exon
CTGCAGCCTGAGGTGCAGCGCTACGAGTGGGTGGTGATCAAGCACCCCGAGCTGACCAAGCCCCCACCCTTGATGGCTGCCGAGCCCACCGCCCCACTCAGCCACTCCGCCTCCTCAGACCCCGCTGACCGCCTCTCGCCCTTCCTGGCCGCTCGCCACTTCAACCTGCCCTCCAAGACCGAGTCCATGTTCATGGCGGGGGGCAGCGACTGCCTCATCGTCG
Seq A exon
GTGAGCGCCAGCAGACGGGGCTCTGGGATGAGGGTGTGGGGTCCGGGCAGCTGAAGCTGCTGCACCCAGCCCTCCCTGACCGGGGTGGCAGAGAAGAGGCCCTGGGTGTCAGGGTGGACCAGGCATGATGGGTGGGAGGGGGCTGGAAGGGAGAGACCAGCCTGGACAGCTGGTCCTGGGGGCTATGGAGGGTCAACGGTCTGTGCGGTTTCAGAGAGGCCCGTGCAGGGCAGGACAGCTGGGACAGCAGGTGAGGTGCCTGGGTCAGTGCTGATAGGGCAGTCAGGCCGCCACTGACCTGAGCATCCTGCAG
Seq C2 exon
GGGGAGGAGGCGGCCAGGCGCTCTACATCGATGGGGACCTGAACCGGGGCCGCACAAGCCACTGCGACACCTTCAACAACCAGCCCCTCTGCTCCGAGAACTTCCTCATTGCTGCCGTGGAGGCCTGGGGCTTCCAGGACCCTGACACCCAGTGACGGCCTGTGCCACGGTGACTGAGCCGTGGTGGGGCGGTGGGCCGAGGCTGGGCTGCCGCCTCGGGCAGCAGAGAGCAGATGAAACCCCCATGTGGTAGGCAGGGTTGGGGGACGGCAGGACCCCATGGCCAAGCCTGGCGTTGCCTGGACCTGCTGCTGCCTCTACCTGGGGTTTGGGCTGGGCTTCCCCAGTCCACCTGCATCTGGGTCAGAGCTGGAGGGCCTGCTGTGCCCCCAGCCCCACCCAGAGCTGGCATAGGAAGTACCTTCCTCCTCCGTGGAGGCTTCCATAGCCCAAGGCCTTGGGAGTGTCTGGGTCTTGCTGCCCCTGAGCCTCTCTAGGCAGCCTGAGCCCCTGGGGTGGGAGTACAACGGCAGTGGGAACGTGCAGCTAAGGGTGGGCCTGTGGTGCCCCCTGCTGGTGCCGCATAGCATCGCGCCCTCCTGAGCAGGGCCCTGCAGCCTGGCTGGCTGGCGACTGAATCCCAGCGTAGATCCCGAGAACAGACTGGCACCCTTGGGCCTGCCCCCTGGCGGACCCCACCCCCTGTCCTGGGCGTTTGCCCCAGTTCCCTCCCCAGGCCTCCTGGGCCACCTCTCACATTAACCCTTCTTGGCTGCCTCTGAGGCTCCCCTGGGCTGCGTTTGGGAGCTGCTGGGTGGGAGGAGGAGGGTGGGATTTGTGCTGGGCTCCACCCCCAGGGAGGGTGGGAGCTGGAGGGGGATGTCACATGTCCTTGTGTTTCTGCAGAGCCTGAAGCTTTTGCTGGGCCTCCCTGCGTGTTCCCATCTGAAGAGGTAGCCCCGGGAGAGGCCCTCAGGGACCGACCCAGACCAGCAAGCTCCATTTCCAGGGGTCTGCCCAGAGAAGCCTGGACCCAGGGGGCTTCTCAGCTCCCCTCCCTTCCAGCCCAGGCCTCCTTGAGCTCCTGTAGCCTCTGCAGCTGCCCATTTCACCTCTTTGTCATTGCAATGACCTGGGGCCCAGGGTCACGCCCAAGCCCCTCTTTGTGGCATGCTCATCTCAGTGCAGCCCCAACTGCTTCTCTGCACCAGGCCCCGTGCCCTCCCCTGGCCCTGGCCACACAGCACCTCCTTGGCCACCTTGCATGGATGCATGTCCTCCCTCTGTCCCTCTTGTGGTGCTGTGGCTGGCCACGTGTCAGGGTTTTCTGTGAGCCTCTCACCTTACAGCCTTTGGGCCCCTGGGCCCCTGCCCTGCCTGAGCCCTGCGCTGGCCAGACGCAGGTAGGTGCCAGGGGAGGCCTTGCCTCTGGGCACTATAGGGGGCAGCCCCCTGCCTTGTGACCTCCCTCCATGCCCCATGACCTCCTTCAACTCGTCTTGAGGGTCTGGTCACCACGGAGGGGAGAAGGGAGACACAGAGGCCCAAGTGGCTGTTCTGGGACCATGGAAGCCTGGGTCACAGAGGCAGGTACCAGCAGTCCTGCCCCCACCCCCGTCCCTGCTGGCCTCCAGCCAGTGCCACTTGGAGTCCCCTGCACCGTGCCACTTTCCATCCCCACACCATTGCCTGCTCCTCCCATGGGGCTTTAGCCTCCCCTGACCATCTGCTCATGTAGCCTCTGACTGGGCGCACAGTGGTGCAGGAGGAAGGACCGGGAACCCTGTGTGGCTTTGGGCAAGCTGACAAACCCGTCTGGAACTCAGTTTCCCCAGCTGTGAAATGGGGCCAGTCCCCATGCCCTGCTGTCCTCCTCACAGGACTGTTGAGAGGCTCGCAGGGGGATGGGGTGAATCCCTCTCACGGGGAGAGGTATGGGAGGGAAGTCGCCACTCATCTCAGCCCACCGCAGCCCTCCAGGCCCCCGCCTGAGCCCCTGAGGCCCTCATCTGTACCGCCAGCTTTGGTGTTCATTAAACATGGTCTTGCTGCATCAACTCCAGGGCTCCAAGCTGAGTCTGATCTCTTCAGCCAGAGGGGCCTCCGGGGGCTTCCTGGGCCTACAGCCAAGCAGGTGTGGGAGGCTGCCCGCTGTAGTGCTCACCCACATTCTATGACTGGAATGCTGCAAGCCTCTTCCAGAGGGAGCCCTCCAGGAGCAGGGAAGTCATATCCGTGGACCATTTGTAGGTTTCCCTCTGCAAACTTCCTGAACTGGGTGGTGATTTTTCTGGCGAGTTAAGTCCAGCAGGTTCTGCGTGGCTGCCCCCAGGGGGCCCCACCCGGGCCTTCCAGTGATCTGGACCAGGAAGACGGATTGCTGCTGGGTCATGATTTCCACATCATGAGCGAAGTTCTTTGTTTTTTGTGTGCATGCAAAATATTGTTTCTTTAAATTTAATATCTTTTCCTAACTTTTCTACTAACCTAGAAGGTATGTGTGATTATTATCTTTTTTATTCTTATCACTGTACTTGTTAGTATCTGATATTAGGTATTCCCAAATAGAACATAATTTATTTTGTTAATGTTCTCTATTTCTTCTTGATTATTTATTAGCTTTGGATGTTAAAAATTAGCCAAAAGTGGCTGCTCTGCCTATGAAGTAGCCATTCTTTGTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162065-TBC1D24:NM_020705:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.218 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0753411=TLD=PD(24.4=29.3),PF0753411=TLD=PU(39.5=40.0)
A:
NA
C2:
PF0753411=TLD=PD(59.2=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTACGAGTGGGTGGTGATCA
R:
GGGTGTCAGGGTCCTGGAAG
Band lengths:
354-667
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)