MmuINT0157422 @ mm9
Intron Retention
Gene
ENSMUSG00000036473 | Tbc1d24
Description
TBC1 domain family, member 24 [Source:MGI Symbol;Acc:MGI:2443456]
Coordinates
chr17:24318170-24318929:-
Coord C1 exon
chr17:24318701-24318929
Coord A exon
chr17:24318341-24318700
Coord C2 exon
chr17:24318170-24318340
Length
360 bp
Sequences
Splice sites
5' ss Seq
TTGGTGGGC
5' ss Score
3.03
3' ss Seq
TTCCCCTGCACATCCCACAGGGG
3' ss Score
8.65
Exon sequences
Seq C1 exon
CTGCAGCCGGAAGTGCAGCGCTATGAGTGGGTGGTCATCAAACACCCAGAGCTGACCAAGGCAACATCCCTCAAGTCTTCAGAGGCTGCAGGCAGTTCTTCCCTCATCAGCCACTGCTCTTCAGACCCCGCTGATCGGCTCTCCCCTTTCCTGGCTGCCCGGCACTTCAACCTGCCCTCCAAGACTGAGTCCATGTTCATGGCTGGAGGCAATGACTGCCTCATCATTG
Seq A exon
GTGGGCACCTGTTCCCTTCACCCCAGACTGGGTCCTGCCTGTACTCGGAGGGGACTTGTGGGTAGCTGAAGCCTCTGTGCCCAGTCCTTGTTGACTACCAGTAGTAGACATCTCAGTTAAGCAAAGGAAAAGGACCTGGGTTGTTTGGGGTAGAGATAGAAACTAAGGGCTAGCAAGCAAGCGTTAGGTAGGGAGTCAGACCTAGATAAATGTGTGCTTCTAGAGGAACCTCTGTAGTTCGAGGGATCTCTCTCCTGCGATTACTATTTAGCAGACCCTTCAAGGACAAAAACGATGGGGTATCTAGGGAAGGGTGGTTGTTGGAGCAGAAAGACATCTGTTCCCCTGCACATCCCACAG
Seq C2 exon
GGGGAGGAGGTGGTCAAGCACTCTACGTTGATGGGGACCTGAATCGAGGGCGCACTGGACACTGTGACACATTCAACAACCAGCCCCTCTGCTCTGAGAACTTCCTCATCGCAGCTGTGGAGGCTTGGGGCTTCCAAGACCCTGACACCGAATGACGGGCCCGCACTGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036473-Tbc1d24:NM_001163849:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.059
Domain overlap (PFAM):
C1:
PF0753411=TLD=FE(40.2=100)
A:
NA
C2:
PF0753411=TLD=PD(23.8=86.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGGTCATCAAACACCCAG
R:
CATTCGGTGTCAGGGTCTTGG
Band lengths:
355-715
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: