GgaINT0013329 @ galGal3
Intron Retention
Gene
ENSGALG00000002267 | DCUN1D3
Description
NA
Coordinates
chr14:15665834-15669721:-
Coord C1 exon
chr14:15669645-15669721
Coord A exon
chr14:15666367-15669644
Coord C2 exon
chr14:15665834-15666366
Length
3278 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
ACTCTGAAACTGTTTTCCAGGTT
3' ss Score
7.63
Exon sequences
Seq C1 exon
TGTTCCATGTGGATCCCAGAGGGCCTGCAGGCGGCTGTGAAAGCCAATGGAAGGACTCCCTGCATAGCCGGAATGAT
Seq A exon
GTAAGTAGAAGTCTGCTTACAAAGTCATGGCTGCAGTGTCAGCTGTTGGAACAGCAATTGCTTCTGGTTCAGCAATTGCAGTGATCCTCTCATGCCTCCCCTACGGAGAGCGTTGTGTGCCTGTTCAGAGCTGGAAAATGAGGGGGCACCCGTGATGCTGTTCCCTATGACCTGGTATGTTAGAAGTCATGCCTCCCTGCCCACAAAATAATGCACAGTGAAATTCCGTACTGTTCTGGTGGTCTCTGCCTAACTGTTTGCAAGAAGCTGAGGCTGGGGTGAGGCTTGGTGAAGTTGGAGCCATTGTTTTTGCCTTAGCTAAAGAACTCCTTCTGGGGAAGGGGTTTACTGTCTGGGGGAGCCGTGTACCTTTTGGTATGTGGTGTCTCAAACTTGTCTATGAGGACTTCTTAAAGGTTTATTCTTTTTCTTTGTCATGATACTTTCTCCTTTTTGAAACTCATTGTAAATACCTTGTGATGCAACACTGTATTAAACAGCATAATGCATGGCTGTATTTTGTTATTCTCTGGATGTAACCAATAATTTCTGTTGCTGCAATGTTAGTCAGTAGAGGAAAATAGTGGGTGTCTTAAATATCTCCTTTGCATGTTTACAGCTCAGGTGTTTTCATTTGAGCTTGATGTTCTGTGTGCCAGAGTTATTACCCAGTCACTTTGTTGTTTACTCCCTTCAACCCTTGGGTTATGTGGGATCTGGTCGCTTGAAAACCTGAGATAAAAACAAACTGCTTTACAGGACTTGAAAAAAGAAAAACAAGCCAAAGCATTCACAGGGTCCTTCTGATCTTCTGTAGGCTTCCTGTGTAATGTTCTGGGTAATGTGGGTCCACACGTCCTTTGTTCTTAGAGGGTGGCTTTCCTTTAACTGGCTGCAGTCTTCCTGTGTTTCCAGCTGCTTTATCCCTTCTGGAAGGGAATAGAGATGCCTTGCTAGGCAGTTCCTGTTGTGTGGAAGATGGGCATCTTTGTGATTCATATTTACTGTATATTGTTGCTCAGTACTTGTCGGACTAATCAGGCTGCTCTGGGAGTACCGTATCCTGTAGCACTGAGTGTGTCCAATTGTTAGTCCTGAGTTTTGGTCTTCTACTAGAATAGTAAAACTGGTGATCAGCGCTGTCTCTCTTGTCTCGCTGTTAAGTTGTATAACCACATTACAGTAATTTTGCTGTTAAGTACTGATTCTTTCGGGAATTGGTGCTTTGCTGCCAGCCCAGCGTAACCTTTGGGTCAGTTACATAGAGCACTTCTTACTTGAAGTTTCCAATCCAACTAGGAGAAATATTCCCATACATCCTTTGCTCCCTTCTCTGTCATTGGCGTGACCTAGGTGTGACTCTTCAGTTAAATGAGTAGCTCTGGTCACCGATCTGGGAGCACTGTCTTTATACTCACTGAGCATGGAGGTCAGCACAGCTCCTTACACTGCAACCAAACCCTTCCTCCATCCTCCCTTAAGGAAAGCTCTGAGTTCTTGCTTCTGTTTCCTTCCGAGGCTCTGGCTGCCAGCATGGTTTGGTGCTGAGTGGAGGCGAGTAGTACGTGAGGTGGATTGAGTACAGCTCAAGCATTCTATACAGGAGTAGCTGAGGGTGTGCCCAAAGACTTGTCTCAGAAAACCAGATGCACTGACCAAATGCCAGTGCATGCAGTGCAATTTATTATTATTTGTAGAAGGAAAATGAAGGGCATGAGCACTAAATTGGCTATGAGAAATCACTGGAAGAGTAAGAATTGGACTTGGCATTTGAATTCTAATGACTTTAAAGGAAAGAAGGAAGGCTGATGTCTGGGAGTTCATCGCTGGGCAGCAATTGACACTGCCTGGTAATATCCTGAGAAAAGGGACTGGCACAGACTGGAGAAGGCAGCATTCCTTGGGTTTGTGGCAGCTCTGCAGTTTGTAGCTGTGAGGTGCTGAGGACCCACAAAGTTCCTACTTTGTGGATTTATGTGGAGATGTGTATCTTAGCGAATCATTTGAGATACAACTGAAGAAGAAATTATTCTTGAATAGGTTAGATTGCATTTTCCTTGCATATAAAAATCATGTTATGGAGTTCATCTTCAAAGCAATTTTAGGAGTTTGTTCCTCCTGTTGCTGTAATAATAATAGTAATAATAATAATAAAAATTACACCAATTCTAAGTGATGAATTGAAGAATTGTTAAAGTCTTTTTGTCAGTGTGGACTCCCAGGTGCTGCCTGCCCACAGAGCTGCAGCCACACTGTTTGCCCCACGCAGGTACAGTGGTGGGGGGAGGATGCAGTGTGTGCTGCTGGTCTGACATGGCTCCCAGCTTTGGAGATTCCCTTTCTGAAGAGCTCTACCTGAGAAAGAGCACGGGAGGATGGTGTGATGTGTGTTTGCTTCCTTCGTGTGTACTTCTCATCTCTTTTCATTCTTGTTCTGGAAGCAATAACCAGAGCTATGAAGTGAACCCCATTTGTGTCTGAGGCTCCAACAAGGAAGGAGGAATATGATGAGCAACTGCTTTCTGGTGATGCTCTGAGAAACAGACTCAGCATGGCTGCGTGCTGACAGAGTGGTGCCAGGCAGTCTGGTTGCTTTTAATGGCATCATTTAAGATCCCTTCTCTGGGGGTAAAAAGTCTTTTCCAAATATGCAACACTTTAGCATTGGGGTTATAAAAATGAAGTATAAGGAAATTGTTTTGGCGTTTTAATTTTGGTTTTTACCAACTGAACTGGGATTACTGCTACTTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCCCCTGGTATGGGTCAGGTTACCTTGTTGCTGTCCCTCCCTTACCCCCACCCAGCACTTTGTTTCACTGTTCTGTGCTCTGTAATTAAAAGGTGGGCATACTTTTTTTAAAAAAAAACAAAAAAACAAAAAAACAAACAAAAAAAAACATCAAAAAAAACATTTCCTTTAAAATATTTCTGGGTTAGAGTAGTCTGTCACGATGAAGTCTGCACATGAATCAACCTCTTTGTAACCTCTGCTGCCATAAGAATTTTAGGAATTTCCTTTATTAGGACCTGTTAATATACAGCAGCAACTGAGCGAGGTGAAGCAGCCTGGAATTGCCCAAAGTTTCCAGCATACACTGGCTTTCTGTATACTATTCCTTTTCAGCAGGCGAAATGAAAGTATCCCGAAGCCTGTCTCCTTCCATTGAATGTTATCCCACGTGTGATGCTTGCAATGTTCTTTGTGTAGAAGCAGCTCTTTCACTCTGAAACTGTTTTCCAG
Seq C2 exon
GTTGGCAGATGGCCGCTAGTGGCATGGTGCAATGTGCTGAGGGGCGGCCGCGGGGCTGTGGCACGGCGAGGAGGCTGCTCTGAATGAAGCCGGGCTCCCTGCACCATGGGCCAGTGTGTCACCAAGTGCAAGAATCCTTCGTCTACCCTCGGTAGCAAAAACGGGGAAAGGGAGACGGGCAGCAAATCGCATAGCAAGAGAAGTGCCCACAAAGATGACCATGCTTCAGCATGTGGGAAGTCCTCGGGAGATATACTTGTGAATGGGACAAAAAAAGCGGATGCTGCTGTGGAGTCCGGTCTGCCTTCAGCATTTTCTGGGGATACAAAGAAAGACTCTGTCTCCAGCACGGAAGAATCGTCCCTCCAAAGGATTGGAGAGTTATTTAGGAGATACAAGGATGAACGGGAAGATGCCATATTAGAGGAAGGAATGGAACGATTTTGCAATGACCTCTGTGTTGATCCCACTGAATTTAAAGTGCTAGTTCTGGCTTGGAAATTCCAGGCTGCTACTATGTGCAAATTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002267:ENSGALT00000003559:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.301
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]