GgaINT0014068 @ galGal4
Intron Retention
Gene
ENSGALG00000003917 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr14:2245301-2246100:+
Coord C1 exon
chr14:2245301-2245474
Coord A exon
chr14:2245475-2245958
Coord C2 exon
chr14:2245959-2246100
Length
484 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTT
5' ss Score
8.17
3' ss Seq
GTTGCCTGTTTGTTTTCAAGGAG
3' ss Score
7.98
Exon sequences
Seq C1 exon
TTATATAATTTCTACCCATCCCTTGGATTTCTCATTGGAGCTTCCAAGACCGTGCTACAAAATATCAGTGAGCTGAGTGCCTTCCTCCAGGAACTCTTCAAGGAGCACGAAGAAGAATTTAATGAGAATAACCTAACAGGCTTCGTTGATGCCTTCATGATGAAGCAACAACAG
Seq A exon
GTACTTCAAAGCAAAATCTGAGGTTCTCTTGGCTCTGGCTCATTATTAGGACCGATCATCTGTCAGGGATGGAGGGTGAGTAAAAATAGAACTGCAGTGAGCACAACATGTTGAAGCTCATCCTCATGGTGAGCAGTGCTGTATCACTCCGCCACTCTGCTGGAACTGCTGGTTGGAGTTGTGCTGAAATAAGCTGCCACTCAACACATGTAGGGAGAAGACCATCCACAACCTCCCTGCAAGAATAATACGGTGGCAAGCCTCACTGCAGTAACTGAGTTCTTACAGACCCACTATCTGGATTTGGAGGCTGGATATACGCAAATTCTATACAGTGTAGGTCCTAATACTAAAATACTAAACATTTTGTTTCCCACAGCACGTCACCACAAAAACCTAAGATGCAGACACAGATGGTGGCAGTGCAGTCACTACTGGTATCACTCGCTGCAGAACTTACAGCTGTTGCCTGTTTGTTTTCAAG
Seq C2 exon
GAGTCAAAGAAACCCCACAGTATGTTCCACAATGAAAGCCTGCTGTTTTCAACCCTGGATCTCTTTGCTGCTGGGACTGAGACTACTTCCACAACCATGCGCTGGGGTCTCCTTCTGATGATGAAATACCCAGAAATTCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003917:ENSGALT00000006238:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.4=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGGATTTCTCATTGGAGCT
R:
TGAATTTCTGGGTATTTCATCATCAG
Band lengths:
295-779
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]