GgaINT0015025 @ galGal3
Intron Retention
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2262752-2263702:+
Coord C1 exon
chr14:2262752-2262925
Coord A exon
chr14:2262926-2263653
Coord C2 exon
chr14:2263654-2263702
Length
728 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGG
5' ss Score
9.4
3' ss Seq
TCACGCTTGTCCTTTTTCAGGAG
3' ss Score
10.57
Exon sequences
Seq C1 exon
TATTTCAATTTCTACCCATTCCTTGGATTTCTTTTCAAAACCCACAAGATTTTGCTTAAGAAAATAGAAGATGTGCGTGTCATTATAAGGCAATACATGAAGGCGAGCAGGGAAGATATCAATGAGAACAGTGTAAGGAGCTACACTGATGCCCTGGTATTCAAGCAGCATGAG
Seq A exon
GTACGGGATTGCTTGGGCTCTGCTGGCTGTTTGCAATGTCTTCTTTTCTAGCTAAAACAGTTGTGGATCTGGATTTCAGCCCTGTCATGTAGCCCTACTGAAATTAATGCTATTGTTCTCGTGGCACTGAAATCAGATTCCAGTCTTGTACGGTTGGTGTACTTTACTGCAGGGATTTTTCTATCAAAACTGAGATGTGAAAGTCATTCTCTCAATCCATTCCCCAAATAGCAGTGCTAATAATGTGACATGAAGTCCTTGTTTGTAGTAGAAAATGCATGAACTCACACGTAAGCTGACTGTGCTTTTCTTTTCATGACAACAAATCAATTAATCATTGATACTGTTGCTCTAAGATGAACGATACACTTAAAGTACTGGAATGATAAATGGTCAGTACATTTGCGAGCCCAGCCCTGCATCTTACTTTAGTAGAGACTGCAATTTCACACATCAGTTGATTTCATTCCACACAAAGTATTTATGCTCTGAGTCTTTTCTTTCCCACTGGATCTGGGCCAACGTGAGGCATTAGTCTTCTTCCCATCACTGTGGAGGAAGGTTCAGTGCAGCCTCCTAAGGCCCAGGAGAAGCAACATCAGACCTTTCACCAAGCTGCTCTCAAACACACGATCATACCCAACAGTCTTCCGGGTTATAAAGTATTTCCCAAACTTGCTGAATACGAATACTATTCTAAGAGCTTTCTCACGCTTGTCCTTTTTCAG
Seq C2 exon
GAGAAAAACAAGAAAGACAGCCTCTTCCATGATGACAACTTAATAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238:ENSGALT00000006237:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(13.2=100)
A:
NA
C2:
PF0006717=p450=FE(3.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCAATTTCTACCCATTCCTTGG
R:
ATGCTATTAAGTTGTCATCATGGAAG
Band lengths:
222-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]