GgaINT0015070 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7638398-7639174:-
Coord C1 exon
chr14:7639051-7639174
Coord A exon
chr14:7638570-7639050
Coord C2 exon
chr14:7638398-7638569
Length
481 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TCAAATCTTTACTTTTTCAGTGC
3' ss Score
8.15
Exon sequences
Seq C1 exon
GAAAGAAAACTTCTTGAGGAAAGAGTAAGTGACCTAACAACAAATCTTGCAGAAGAGGAAGAAAAAGCCAAAAACCTTACAAAGCTGAAAAACAAACATGAATCCATGATTTCAGAACTGGAAG
Seq A exon
GTAATACAAAGATGCTCTGTGTCAGATATTTGCTTTGGTACATATAAAAAATAAACAACAATAAAACCCTAAAGAGAATCTGGAGTGAACTTCTAAAAACTATGTGTTTTCCAATTTCATATGCTGAAACCATTTTGTGAATGACAAATACTGAAACCCCAAGATGCATAAACCATTGATAGCTTTTCTTTATATATATAAAGAGGAGAGGAGAGGTAGTTGGGGGAAAAAAGTGTTTCTGGAGATATATATATATATTTAGTGGCTGGAAATAAGTCATGATAGCAAGGTACTGCATGTTGCTTCAGAAAGACAATAACTCACACTCACTGAATATTACATATATCACTTAATTATCACACATATATACATAATATCACAGCCTTACTGAAGATGAGAACATTTTTGCATCCAAGTTCAAGATCAGATGAGTGCTCCTTGCACTAACCCACTCTCATGACTCAAATCTTTACTTTTTCAG
Seq C2 exon
TGCGACTGAAAAAGGAAGAGAAGAGCAGACAAGAACTGGAGAAAATAAAGAGGAAGTTGGAAGGAGAGTCAAGTGATCTGCATGAGCAAATTGCAGAGCTCCAGGCACAAATTGCTGAGCTGAAGGCACAGCTAGCCAAAAAGGAGGAAGAGCTGCAGGCTGCTCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=NA C2=0.603
Domain overlap (PFAM):
C1:
PF0003816=Filament=PU(3.7=21.4)
A:
NA
C2:
PF0003816=Filament=FE(23.8=100),PF093045=Cortex-I_coil=PU(47.2=72.4),PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTTCTTGAGGAAAGAGTAAGTG
R:
CCTGCAGCTCTTCCTCCTTTT
Band lengths:
278-759
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]