MmuINT0103270 @ mm10
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14215736-14218065:-
Coord C1 exon
chr16:14217942-14218065
Coord A exon
chr16:14215908-14217941
Coord C2 exon
chr16:14215736-14215907
Length
2034 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
TAGCTCTGACTCTGTTACAGTGA
3' ss Score
4.61
Exon sequences
Seq C1 exon
GAACGAAAACTCCTTGAAGAGAGGGTCAGCGACTTGACAACCAACCTAGCAGAAGAGGAAGAAAAGGCTAAAAACCTCACAAAGCTGAAGAGCAAGCATGAGTCTATGATCTCAGAGCTGGAGG
Seq A exon
GTGAGTGGGGAAATGTTAGGTAAAATGAACTGGGCTCAAAAGACAAATACATTTCCTCTCATATGAAGAATATAGATTTTAATATTTTGTTTTGCAAATTTTTAATTTATATTTTAAAGAAAATAGAAAATAAAATAGTGCTGTGTGAATGTATTACCATATATGGTATAGTGATATATGTGTACTCGTATCTATGGTATGTGTGGTGTGTGTGGTATATGTGATAAGTGTGTATGCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTATATGGTATATGTGGTATCTGTGTGATATGTATGTGTTTTTATGTATGGTATGTGTGTATATGTGTGTGCAGTGTGTATATGTGGTATATATATGTGTGTATGCATGTGTATGTGTGGTATATATGTATATGTTATATATATGTATGGTATGTGGGGGGTGATATGTGTGTGCTTGTATGTATGATATGTGTGGTGAGTGTAATGTATGTGATAAATGCGTATGTATGTATATGTATTGTATATATATGTGTGTGTTGTATGTACATATATATGATATATGTGGTGTGTGTATATATGGTATATGTGGTATGTGTATTATGTGTGATATGTGTATGTATGTGTGTGCAATGTGTATATGTTGTGTGTATATATGGTATGTGTGGTGTATATTGTGTGGTGTGTATATGTATGGTGTGTGGTATGTGTGTATATTTGTGTGTATGCTCATGCATGTCACACCATGTACATGGAATATTATAAGACAACTTTGTAGAATTGGTTCTCTCCTTATACTTTGCAAAACCTGGGGATTGAACTTAGATTGTTAAGCTTGATGCAAGTGCTTTTACCTGCTAAATCACCCTATTGGCCCTATTTTACTTTATTTTTAGAGACAGGGTCTCATGTGGCCTAGGCAGGCCTGAAACTTACTATGTAGCCAAAGCTAGCTGTGAGTTCCTGATCCTTCTGCCTACACCTCCCAAATGCTGGTATAACAGGTAACACTACACAGTAATACTACTATGCTGAGCTTATACAGTGCTGGGAATTGAACCCAATTGCATGCAAGACAAGCACTATCAACTGAGTTACATCTCCAGTCCAGAATCTAGATTTTAAATAAGTACATATGAATAAGACATGAAAATTGAAGGAGACATATGGAAAAGAGGGGTGTTAAGGTATAGGGTAGGTGGCTGAGAGAGAGAGGAAGGTTGGGTAAGAGGAACAATACCTTTTCTCTTACATGGAATCACATGGAGAAAAGAAAAGCCTTGAAAGCAGAAAGAAGAACTATTTGAATAAAGAAAGATGACCAAAGGAGTGGGGAAGAGGGAAAGAGAGCAACTGAGGCAAATCCAAGTCTCGATTGAGCCATCATGGGTGTCTATAAAAATGTCATCACAAAACCTACACAAAACCTGTAGAACTATTCTACACAGTCACTTTAAAAAATCCCAGCACCACACTCGGTGGCTCACAAATACTTGTAATTCCAGCTGTGCAAGATCCAGCAACCTCTCCTGGCCTCCAAAGTCTCCCTCACACATGTGTGCACACATGCTCACATATATACCCACAAAATAAAACCTTTTTTTAAAAAAAGGATTTATTTTGTGATTATGAGTACACTGTCATTGTCTTTGGATACACCAGAAGAGGGCATCAGATTCCATTACAGATGCTTGTGAGCCACCATGTGGTTGCTGGGAATTGACTCAGGACCTCTGGGAGAACAGTCAGTGCTCTTAACCAATCTCTCCAGCCCCCAATAAATCTTTTTAAGAAAACAAATAAACCAGAAAAACTCAGAAAGGAACCATTAGAAAGACAGATTATCCTGGGAAAGAGATTCTACCTGGGCCCCACACTGTAGGAGGCACATCCTGATAGCATTCCCCCAAGCTCGGCATTCCCTAAAGTAAACTGGAGAAGGTCTAGGGCTGAGTGTGCAGTGTCCATAGCCCAGGTAGAAAGACACATGCTTTTTCCTGGGGGCATCCCCCAACTGAGGTAGCTCTGACTCTGTTACAG
Seq C2 exon
TGAGGCTGAAGAAAGAGGAGAAGAGCCGGCAGGAGCTGGAGAAACTCAAGAGGAAACTGGAGGGTGATGCCAGTGACTTCCATGAGCAGATCGCTGACTTGCAGGCCCAGATTGCAGAGCTCAAGATGCAGCTGGCAAAGAAAGAGGAAGAGCTACAGGCAGCTCTAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830:ENSMUST00000090287:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.719 A=NA C2=0.279
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(27.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(30.4=77.6),PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types