HsaINT0107515 @ hg19
Intron Retention
Gene
ENSG00000133392 | MYH11
Description
myosin, heavy chain 11, smooth muscle [Source:HGNC Symbol;Acc:7569]
Coordinates
chr16:15831306-15832545:-
Coord C1 exon
chr16:15832422-15832545
Coord A exon
chr16:15831478-15832421
Coord C2 exon
chr16:15831306-15831477
Length
944 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
GAGCACCTTGGTTTTTGCAGTGC
3' ss Score
4.94
Exon sequences
Seq C1 exon
GAACGAAAACTCCTTGAGGAGAGGATTAGTGACTTAACGACAAATCTTGCAGAAGAGGAAGAAAAGGCCAAGAATCTTACCAAGCTGAAAAACAAGCATGAATCTATGATTTCAGAACTGGAAG
Seq A exon
GTAAACCAGCTACCAAGAGATTTATTTTTATTTTATTTTATTATTTTTTTTAGAGATGAGGTCTTGCTCTGTTGCCCAGGCTGCAGTGCAGTGGTGCGATCATGGCTCACTGCAGCCCGAAACTCCTAAGCTCCAGTGATCCTCCTGCCTCAGCCTCCTGAGCAGCTGAGACTACAGGCGTGCATCACCACACCCAGCTAATTTTTTTTTATTTTTTATTTTGTAGAGATGGGGTTTCACTATGATGCTCAGTCTAGTCTCAAACTCCTGGGCCCAAGCAGTCCTCCCACCTTGGCCTCCCAAAGTGCTGGGATTATAGGCATGAGCCACTATTCCTGGGCTTGAATGGGTATTTTTAAAAGCAGGAAAATCAGAAAGGAAATTTGAGGATGGCAGATCATCCCATGAGTGACAACTAACTCTATGCCACCTCTCGAAATCACCCTTAGTCATCACATGCACTAATAATATGATAAAAGGGCTGGGTGCGGTGGCTCTCGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGTGGGCGGATCACGAGGTCAAGAGTTGGAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCAAAATACAAAAATTAGCCAGGCGTGGTGGCGGGCGCCTGTAATCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGGTTGCAGTGAGCTGAGATTGCGCCACTGCACTCCAGCCTGGGCAACAAGAGCAAAACTCCATCTCAACTAATAATAATATTATGACAATATAAGGTGCTGTTCATCGGGAGATAATGGTCCAGACCGTGACTATGATGGTTACTGATTGGGGGATGTGTTCATCTCCTCCGGGTAAAATGCCTGGGCAGGAAGGCTCATTTCCGGGCATCTCTCTGGGGCCTCCCCTTCCTGAAGAGCACCTTGGTTTTTGCAG
Seq C2 exon
TGCGGCTAAAGAAGGAAGAGAAGAGCCGACAGGAGCTGGAGAAGCTGAAACGGAAGCTGGAGGGTGATGCCAGCGACTTCCACGAGCAGATCGCTGACCTCCAGGCGCAGATCGCAGAGCTCAAGATGCAGCTGGCCAAGAAGGAGGAGGAGCTGCAGGCGGCCCTGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133392-MYH11:NM_001040113:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.786 A=NA C2=0.293
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(27.9=100),PF0003816=Filament=PU(1.9=11.9)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(29.9=75.9),PF0003816=Filament=FE(22.2=100),PF0157614=Myosin_tail_1=PU(2.9=43.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTGAGGAGAGGATTAGTGACT
R:
CTGCAGCTCCTCCTCCTTCTT
Band lengths:
272-1216
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)