GgaINT0015078 @ galGal3
Intron Retention
Gene
ENSGALG00000006520 | MYH11_CHICK
Description
NA
Coordinates
chr14:7632089-7633185:-
Coord C1 exon
chr14:7632973-7633185
Coord A exon
chr14:7632302-7632972
Coord C2 exon
chr14:7632089-7632301
Length
671 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
AATTTCTCATTGCTTAAAAGGTC
3' ss Score
6.45
Exon sequences
Seq C1 exon
ATGCTGGCTGAAGAGAAAAACATCTCTTCAAAATATGCAGATGAAAGGGACAGAGCAGAAGCTGAAGCTAGAGAAAAGGAAACAAAGGCTCTATCCTTGGCCCGTGCACTTGAAGAGGCATTGGAAGCCAAAGAAGAACTGGAGAGAACAAACAAAATGTTGAAAGCTGAAATGGAAGATCTTGTTAGCTCCAAAGATGATGTTGGCAAGAAT
Seq A exon
GTAAGTTTGGGGCTCAGAATGATTTTCACAATAACTTAGAATAGCAGCTAACAAACAGATAATTGTTTTCAGTGTGGGAAGTTTTCGGTAGTGCACAAATCCATTCAGCAAGATCAGGTATTTTGTGCAGAACTCCTAAGTTTATTCCATTGCACCCAAACCTTCAGGAGACTTTACAAAGTAACTGTAAGTTACTTTTTTTCTTAACATGGCTTCAAGCCTGAAGATTGATTTCTAAGAAGGAAAAATATTAAAGACTTTCTAATTCATTTAGTAATTTAATAAATAACTTTCAAGTGGTAAACTCTGCAAATCTCATTTTAATGATTATATTTGACTTTACCACCAGCTTAACATGTACTTGTATAGCTGCAGCAAATTTCCACTGTTACGTTGCCAATCACTTATTTTATTACAGTGATAACACCACTTGTAATACTAACTAAATTCAGTGATAATACTTGACTGATTAAAATCAGTATGTAATAAAGTGTAAGGAATCTCACGTTATTTCAAGGGAGACTAAGTATACAAAAAATGCAATTAGCTCAAATTAGCTCATTTGCTGTCCGCAGCTGATATTTTCAAATGTGGCCTATGTAGAAAATAAGCTGGGTTTAACCAGATTTATTTTTGTATAACAAATCTATAAATTTCTCATTGCTTAAAAG
Seq C2 exon
GTCCATGAATTGGAGAAATCTAAACGGACACTTGAGCAGCAAGTAGAAGAGATGAAGACACAATTAGAAGAGTTAGAGGACGAATTACAGGCTGCTGAAGATGCCAAACTCAGGTTGGAGGTTAATATGCAAGCCATGAAAAGCCAGTTTGAAAGAGATTTACAAGCCAGAGATGAACAGAATGAGGAGAAGAGGAGACAACTCCTTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006520:ENSGALT00000033605:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.887 A=NA C2=0.915
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF045827=Reo_sigmaC=PD(7.1=14.1),PF115593=ADIP=PU(36.6=57.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.6=97.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTGAAGAGAAAAACATCT
R:
CTGGCTTTTCATGGCTTGCAT
Band lengths:
358-1029
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]