RnoINT0096367 @ rn6
Intron Retention
Gene
ENSRNOG00000057880 | Myh11
Description
myosin heavy chain 11 [Source:RGD Symbol;Acc:3136]
Coordinates
chr10:848411-849045:+
Coord C1 exon
chr10:848411-848623
Coord A exon
chr10:848624-848832
Coord C2 exon
chr10:848833-849045
Length
209 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CTGCGCACTCTGCCCGCCAGGTG
3' ss Score
8.46
Exon sequences
Seq C1 exon
TTGTTAGCTGAGGAAAAGAACATCTCCTCCAAGTATGCGGATGAGAGAGACCGAGCTGAAGCAGAGGCCAGGGAAAAGGAAACGAAGGCTTTGTCTCTGGCCCGGGCCCTGGAGGAAGCCCTGGAAGCCAAAGAGGAACTGGAAAGGACCAACAAGATGCTCAAGGCCGAGATGGAAGACCTGGTCAGCTCCAAGGATGACGTGGGCAAGAAT
Seq A exon
GTAAGTTGTTCTGCATTTCACCAACGGGTGCCTCAGCAAGGTACATCGGTCTGGGGCGGGCACAAGAAACCCAAGAACAGCAGCTGAGGCTGAGCCATCAGGGGCCAAGTCAGACCCTGGAGGCTAAAGCCACTGCTCTGGCTCATGAACCTCTATTCCATGAGGGTAAATCTCCCTTGAACAAAAGCCCTGCGCACTCTGCCCGCCAG
Seq C2 exon
GTGCACGAGCTGGAGAAGTCCAAACGAGCCCTGGAGACCCAGATGGAAGAGATGAGAACTCAGCTAGAGGAGCTGGAGGACGAGCTGCAGGCCACTGAAGACGCCAAGCTGCGGCTGGAGGTCAACATGCAGGCCCTCAAGGGCCAGTTTGAACGAGATCTCCAGGCTCGGGATGAGCAGAATGAGGAGAAGAGGAGGCAGCTACAGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000057880:ENSRNOT00000084608:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=NA C2=0.859
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF045827=Reo_sigmaC=PD(7.1=14.1),PF115593=ADIP=PU(36.9=57.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.3=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAAGCCAAAGAGGAAC
R:
TGTAGCTGCCTCCTCTTCTCC
Band lengths:
301-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]