MmuINT0103279 @ mm10
Intron Retention
Gene
ENSMUSG00000018830 | Myh11
Description
myosin, heavy polypeptide 11, smooth muscle [Source:MGI Symbol;Acc:MGI:102643]
Coordinates
chr16:14205501-14206123:-
Coord C1 exon
chr16:14205911-14206123
Coord A exon
chr16:14205714-14205910
Coord C2 exon
chr16:14205501-14205713
Length
197 bp
Sequences
Splice sites
5' ss Seq
AACGTAAGT
5' ss Score
10.74
3' ss Seq
CTGCTCATTCTGCTTACTAGGTG
3' ss Score
7.61
Exon sequences
Seq C1 exon
TTGTTAGCTGAGGAGAAGAACATCTCCTCCAAGTATGCGGATGAGAGAGACCGAGCTGAAGCAGAGGCCAGGGAAAAGGAGACAAAGGCTTTGTCTCTAGCCCGGGCCCTGGAGGAAGCCCTGGAAGCCAAAGAAGAGCTGGAGAGGACCAACAAGATGCTCAAAGCTGAGATGGAAGACCTGGTCAGCTCCAAGGATGATGTAGGCAAGAAC
Seq A exon
GTAAGTAGTTCTGCATCTCACCAACGGATACATCAGTCTGGTGTGGGCACGAGAAGCCAGGGAACAGCAGCTGGGGCTGAGCCATCAGGGGCCAAGTCAGACCCTGGAGGTCAAAGCCACCGCTCTGGCCTCGCGAGCCTCTATTCCATTAGGGCAAAGCCTCCCTGAGCAAAGGCTCTGCTCATTCTGCTTACTAG
Seq C2 exon
GTGCATGAACTGGAGAAGTCCAAGCGTGCCTTGGAGACCCAGATGGAAGAGATGAAAACCCAGCTGGAGGAGTTGGAGGATGAGCTGCAGGCCACTGAGGATGCCAAGCTGCGGCTAGAGGTCAACATGCAGGCCCTCAAGGGCCAGTTTGAACGCGATCTCCAGGCTCGGGATGAACAGAATGAGGAGAAGAGGAGGCAGCTACAGCGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000018830:ENSMUST00000090287:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.831 A=NA C2=0.859
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(8.2=100),PF045827=Reo_sigmaC=PD(6.5=12.7),PF115593=ADIP=PU(36.9=57.7)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(8.2=100),PF115593=ADIP=PD(61.3=95.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGAGGCCAGGGAAAAG
R:
AGCTCATCCTCCAACTCCTCC
Band lengths:
242-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types