GgaINT0016427 @ galGal3
Intron Retention
Gene
ENSGALG00000001967 | E1BVQ5_CHICK
Description
NA
Coordinates
chr14:14338807-14339775:-
Coord C1 exon
chr14:14339502-14339775
Coord A exon
chr14:14339012-14339501
Coord C2 exon
chr14:14338807-14339011
Length
490 bp
Sequences
Splice sites
5' ss Seq
GGAGTACGT
5' ss Score
5.17
3' ss Seq
CTGCTGCTGCTCCTCTGCAGAGG
3' ss Score
8.77
Exon sequences
Seq C1 exon
GTGGTCTGGAGGAGTACCTCATCTCGAGAGCGTCCGAGGAGGGGGGAGCCTTCAATGAGCACTACATCGCTGCCGCCTCCTTCGAAGGAGCTGGCAACCACACCGTGGTCACTGCACTGTTCAACAACCAGGCCTACCACTCCCCAGCCACCGCCCTCATGCTGGCTGACAATGCTGTCTTCAGGGTGCTGATGGGCCCCAACGCTTCCATCACGGTCACCAACTACCCTCAGCCACGCAACATCACCGAGAAGGCCAAGGACCAGCTCATGGA
Seq A exon
GTACGTGTTTGCCTGGTGCTTGCATTCCTGCTAGGACTCACAACTTGCATTTGGCACAAATGGCTTGGTTGTGCTGGTGGGAGACTCAGGCAAGAGTTTCTCAGACCTCTATGTAGCTGTGATTGCACTCTGGAGGCCTGGAGAGCAAAGCTGTGTGGCTGACTGACCTGCTTTAAGCCTGGCAGCCCATAGTCCAACACACACATCTCAGTGGTTGGGGGTTCCCCTTTAGAAGCTTGCAGCCCGTGGCTGGGAACCCCTTCCCTGCCAGACTCAGAGCTGCTGTGCAGCAGAGGGGCTGTGTGGCTGTGCATCCCATGAAGCCCTGCATCCAAGGCCTGGGCCTCGTGTCTTCCAGAGGGGTGATGTGTGGGACCTGGCAATGGCAGGGTGGTGTGCTGGGGCAGTGCAAATGTGTTGCCTGCACGTAGCCTCAGTGTTGATCTGTCACACTGTTCGTGTTCTAACCACTGCTGCTGCTCCTCTGCAG
Seq C2 exon
AGGCCAGACCGGGTTTGCCATCGCCATCAACTTGCTGTATGGCATGGCCTCGCTCGCCAGCACCTTTGCTCTCCTGCTGGTCAGTGAGCGGGCCATCAAGGCCAAGCACGTCCAGTTCGTCAGCGGTGTCTACGTGGTCAACTTCTGGCTGTCTGCCTTGCTCTGGGACATCATCAATTTCCTCATTCCGTGTGCTCTGATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001967:ENSGALT00000003054:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(22.7=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGAGCACTACATCGCTGCC
R:
GTAGACACCGCTGACGAACTG
Band lengths:
354-844
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]