GgaINT0022055 @ galGal4
Intron Retention
Gene
ENSGALG00000006853 | QARS
Description
glutaminyl-tRNA synthetase [Source:RefSeq peptide;Acc:NP_001012800]
Coordinates
chr12:11581871-11582311:+
Coord C1 exon
chr12:11581871-11582123
Coord A exon
chr12:11582124-11582201
Coord C2 exon
chr12:11582202-11582311
Length
78 bp
Sequences
Splice sites
5' ss Seq
GCGGTACGG
5' ss Score
8.53
3' ss Seq
TGAGCGCGCTGTGGCCGCAGCCG
3' ss Score
4.83
Exon sequences
Seq C1 exon
NNGGCGCTGGATTTGTTCACCGGCATCGGGCTGACCGAGGCCAAAGCCCGCGAGACGCTGCGCAACGCCGCGCTGAGCGCGCAGCTCCGCCAGGCCGTGCTGCAGGCCCGCGCCGCGCTGGGCTCAGGCCTGGATAAAGCCACCGGCGCTCTGCTGTACAACGCGGCCGCCCGGCTCCGCGACCCGGACCGCTTGGCCTTCGTGGTGGGGTACATCGGGCGGAGGGAGATCCGCACCGACCAACAGTTGGGCG
Seq A exon
GTACGGAACGGCCTGGGGGGGGTGGGGGAGCGGGGCCCGGGGCCGGTGAGGCCGGTGCTGAGCGCGCTGTGGCCGCAG
Seq C2 exon
CCGCCCTGCAGTACCTCCGCAGTCACCCGCTGGAACCGCTGGAACCGGCGGACTTCGAGCGGGCGTGCGGCGTGGGAGTGCGGGTCAGCCCCGAGCAGATCGAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853:ENSGALT00000011085:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=PU(52.8=98.8)
A:
NA
C2:
PF0455810=tRNA_synt_1c_R1=FE(22.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGGCCTGGATAAAGCCAC
R:
GGTTCCAGCGGTTCCAGC
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]