RnoINT0121189 @ rn6
Intron Retention
Gene
ENSRNOG00000060912 | Qars
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117298323-117298930:+
Coord C1 exon
chr8:117298323-117298470
Coord A exon
chr8:117298471-117298820
Coord C2 exon
chr8:117298821-117298930
Length
350 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
AGTTGCTTTTCCTTTTTCAGCTG
3' ss Score
10.52
Exon sequences
Seq C1 exon
GCACAGCAGACTCTAGGGTCTACCATCGACAAGGCTACTGGGACCCTGCTATATGGCTTGGCCTCCCGACTCAGGGATACTCGGCGTCTTTCTTTCCTTGTGGGCTATATAGCCAATAAGAAGATCCACACTGAGCTCCAGCTGAGCG
Seq A exon
GTGAGACCCCTGCCTGTTTTACAAATCCACCTTCAATCTCTCCCTTACCAAGACTTCTGTTTGCTTTTTCTGTCAACTTCCCCAGTTGCTTTCTGGACATCAGGTTCTGGACAGGACCTGGGGCGTGGAGGGAGAGATCTGGTATGGATCGGAGAATTACCACAAAGAGAAGCCTGCTTCAGAACACATGCTTCCCTTTTCTATGGCCTCAGGCTTCTTTCCAGTGGTGTCAGGGCCTAACCTCTTCGGTATCTTAGTAAACAAAATAGTTACGTTTTCATGGTACTCAGGCTCTATCTATCCACTTCTTGGAGCTGACTTTGTTCAGTTAGTTGCTTTTCCTTTTTCAG
Seq C2 exon
CTGCTCTTGAATATGTTCGGAGTCATCCCCTGGATCCCATTGATACCAAGGACTTCGAGCAGGAATGTGGTGTTGGTGTGGTGGTGACACCAGAGCAGATTGAGGAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=FE(30.1=100)
A:
NA
C2:
PF0455810=tRNA_synt_1c_R1=FE(22.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGCAGACTCTAGGGTCT
R:
GCTTCCTCAATCTGCTCTGGT
Band lengths:
257-607
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]