Special

HsaINT0135708 @ hg19

Intron Retention

Gene
Description
glutaminyl-tRNA synthetase [Source:HGNC Symbol;Acc:9751]
Coordinates
chr3:49141296-49141904:-
Coord C1 exon
chr3:49141757-49141904
Coord A exon
chr3:49141406-49141756
Coord C2 exon
chr3:49141296-49141405
Length
351 bp
Sequences
Splice sites
5' ss Seq
GCGGTGAGA
5' ss Score
7.4
3' ss Seq
CACGGGCTCTTTCTTCTCAGCTG
3' ss Score
8.18
Exon sequences
Seq C1 exon
GCTCAGCAGACCCTGGGTTCCACCATTGACAAAGCTACCGGGATCCTGTTATATGGCTTGGCCTCCCGACTCAGGGATACCCGGCGTCTCTCCTTCCTTGTAAGCTACATAGCCAGTAAGAAGATCCACACTGAGCCCCAGCTAAGCG
Seq A exon
GTGAGACCCCTACCTGTCCTGCCAGTTCGCACCAATGCCTCCCTTCAGCCAAGACCCCTGTCTTCCCTTTTTGCCAAGTCCTCCAGTTTCTTTCTAGACACCTAGTTCTGCACAGGCACTGAGGCATGGAAGGGGTGGCCTATGGTGAGACTGACACGGGAACTGTCAGGGTCTGAGGGGGGATCCACTCTCGACACGTGCTTCTTTCTTCCCTGTGTTCTCTAGGGTGGTGGTGCCAGGGCTTAACTTTTCAGGAGGCCAGACTATCCTTGGAGTTTCATGAGATTAGGACCCTGTCTGTCCACTTCTTGGAGCAGAGATGCCACAAACTCACGGGCTCTTTCTTCTCAG
Seq C2 exon
CTGCCCTTGAGTATGTGCGGAGTCACCCCTTGGACCCCATCGACACTGTGGACTTCGAGCGGGAATGTGGCGTGGGTGTCATTGTGACCCCAGAGCAGATTGAGGAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172053-QARS:NM_005051:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.009
Domain overlap (PFAM):

C1:
PF0455810=tRNA_synt_1c_R1=FE(30.1=100)
A:
NA
C2:
PF0455810=tRNA_synt_1c_R1=PD(3.3=3.8),PF0455810=tRNA_synt_1c_R1=PU(53.0=55.7)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAGCAGACCCTGGGTTCC
R:
CTCCTCAATCTGCTCTGGGGT
Band lengths:
254-605
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Autistic and control brains
  • Pre-implantation embryo development