GgaINT0022057 @ galGal3
Intron Retention
Gene
ENSGALG00000006853 | QARS
Description
NA
Coordinates
chr12:11870901-11871126:+
Coord C1 exon
chr12:11870901-11870976
Coord A exon
chr12:11870977-11871061
Coord C2 exon
chr12:11871062-11871126
Length
85 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CACACCGTGTGCCCCAACAGCGG
3' ss Score
7.06
Exon sequences
Seq C1 exon
GTGGAGGCCGTGGTCAGCCGGCACCGGGAGGAGCTGCTGGCGGAGCGGTACCACTTCAACACGGGGCTGCTGATGG
Seq A exon
GTGAGTGCGGGGCTGGGGATGGAGGCGGGGCTGGGGGTCTTCTTGTAGCCCCTCGGGCCGCACCCCACACCGTGTGCCCCAACAG
Seq C2 exon
CGGAGGCGCGGAGCCGGCTGCAGTGGGCGGATGGGAAGAGCATCAAGAACGAGGTGGATCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853:ENSGALT00000011085:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=FE(15.3=100)
A:
NA
C2:
PF0455810=tRNA_synt_1c_R1=PD(7.4=54.5),PF0455710=tRNA_synt_1c_R2=PU(8.7=36.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCGGTACCACTTCAACAC
R:
TGCAGATCCACCTCGTTCTTG
Band lengths:
99-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]