MmuINT0130124 @ mm10
Intron Retention
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108509149-108509505:+
Coord C1 exon
chr9:108509149-108509224
Coord A exon
chr9:108509225-108509440
Coord C2 exon
chr9:108509441-108509505
Length
216 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTTATGTTTATCCTCTTAGGAG
3' ss Score
8.25
Exon sequences
Seq C1 exon
GTGGAGTCCACCATAAATAAGCATCAGTTGCAGCTCCTAGCGGAACGGTACCGTTTCAACATGGGGCTGCTAATGG
Seq A exon
GTGAGTTGGATCTGGGGCAGGGAGTTACTTGGAAGTGCATCATTCTGATTGTTCCTTTCATTTTGGGCATTCATGGGAAGGGCGATGGGAGTGTGAGCAGGGACAGGGTGCTAGTGTTCTGACAGGGTCCTGGTCCTGAGTCAGCTGGGCCTTCTTTGAGGAGGGGAAGAAATCCTCCCTTTTCCTCCTTGCAGCTTCTTATGTTTATCCTCTTAG
Seq C2 exon
GAGAGGCTCGGGCTGCGCTCAGATGGGCAGACGGCAAAATGATCAAGAACGAGGTGGATATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604:ENSMUST00000006838:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=FE(15.3=100)
A:
NA
C2:
PF0455810=tRNA_synt_1c_R1=PD(7.4=54.5),PF0455710=tRNA_synt_1c_R2=PU(16.7=36.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTCCACCATAAATAAGCA
R:
CTGCATATCCACCTCGTTCTTGA
Band lengths:
140-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types