RnoINT0121196 @ rn6
Intron Retention
Gene
ENSRNOG00000060912 | Qars
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117299071-117299436:+
Coord C1 exon
chr8:117299071-117299146
Coord A exon
chr8:117299147-117299371
Coord C2 exon
chr8:117299372-117299436
Length
225 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TCTTATATCCATACTCTTAGGAG
3' ss Score
6.02
Exon sequences
Seq C1 exon
GTGGAGGCCACCATAAATAGGCATCGTCCACAGCTCTTAGTGGAACGGTACCGGTTCAGCATGGGGCTGTTAATGG
Seq A exon
GTGAGTAGAATCTGGGGCAGGGAGTTACTTGCAGTTTTATCATTTTGGCTGTTTCTTCCATTTTGGCCACATATGGAAAGAGAGATAGCAGGGTGAGCAAGGAACACCTTGCTGGTGTTCTGGCCATGCCAAGGTTCTGATCCCTGTGTCAGCTGGACCTTCTTTGAGGAGGGGAAGATGTACCCCATTTTCCCTCCTTGCAGCTTCTTATATCCATACTCTTAG
Seq C2 exon
GAGAGGCTCGGGCTGCGCTCAGATGGGCAGATGGCAAAATGATCAAGAACGAAGTGGATATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.058 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=FE(15.3=100)
A:
NA
C2:
PF0455810=tRNA_synt_1c_R1=PD(7.4=54.5),PF0455710=tRNA_synt_1c_R2=PU(8.6=36.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGGCCACCATAAATAGGC
R:
CTGCATATCCACTTCGTTCTTGA
Band lengths:
140-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]