GgaINT0022058 @ galGal3
Intron Retention
Gene
ENSGALG00000006853 | QARS
Description
NA
Coordinates
chr12:11871062-11871265:+
Coord C1 exon
chr12:11871062-11871126
Coord A exon
chr12:11871127-11871211
Coord C2 exon
chr12:11871212-11871265
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
ACCACCTTCATCCCACCCAGGTG
3' ss Score
8.81
Exon sequences
Seq C1 exon
CGGAGGCGCGGAGCCGGCTGCAGTGGGCGGATGGGAAGAGCATCAAGAACGAGGTGGATCTGCAG
Seq A exon
GTGGGTGCTGGGCACTGCGGCACAACGCGCCCCCGGGCCGCCCCGGGTATGGAACACCTCGTCAGACCACCTTCATCCCACCCAG
Seq C2 exon
GTGCTGCATTTGCTGGGACCAAAGACAGAAGCTGATCTGGAAAAGAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853:ENSGALT00000011085:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.389
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=PD(7.4=54.5),PF0455710=tRNA_synt_1c_R2=PU(8.7=36.4)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(18.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGGCGGATGGGAAGAG
R:
TGGTTTCTTTTCCAGATCAGCT
Band lengths:
95-180
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]