MmuINT0130106 @ mm9
Intron Retention
Gene
ENSMUSG00000032604 | Qars
Description
glutaminyl-tRNA synthetase [Source:MGI Symbol;Acc:MGI:1915851]
Coordinates
chr9:108411810-108412479:+
Coord C1 exon
chr9:108411810-108412057
Coord A exon
chr9:108412058-108412425
Coord C2 exon
chr9:108412426-108412479
Length
368 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAT
5' ss Score
6.75
3' ss Seq
GTCTGTATCTATCTGCTCAGGTG
3' ss Score
8
Exon sequences
Seq C1 exon
ATGATCAAGAACGAGGTGGATATGCAGGTGGGCACCTCCCTAAGAAGATGCTCCGGAGATAAAGGGAACGAGACCCTGTCCTTCTTCTGACAGGGAAAGTGGAGCCCAGTGTGGAGGGAGTAGCGCTTAACTTGGGTCTCTGAGTGAGGGTGACCCCCTTTCTTGGGAAGCTGCTTCCTCCTCTCACATGTGCATGCTGTGGCCTTTATTGATATCTGGCAAAGAATCACAAGAGGACGATGACTGAG
Seq A exon
GTACATTGTTTATCGTGATGCTGGGCCCACGTTATTTATCTGTAAATGGCAGCACTCGTTCTCTGGGCCCAGGATAAGTCCTCAGAAAGGAAAAAGCATTCAAGGCCAGTAGAACCATGTGAAGAAGCCAGCTGGGCAGAGGCAGGTGGATCTCTATGAGTACTAATCTGGCCCTCATAGTGAGTTCCAGACCAGCCGAGGATATATAGTAAGATCCCATGTCAAACAGCAAAACATGTGATGAGATACAGCGGGATGGGGTGGATAGGTTGGCTGGCAGAAAAGCCAGGAAGCCCTTGGTTGTCGGGGAAGGACTCCATCAGGAGATTCTTGAGAGAGTACACCCTTGTCTGTATCTATCTGCTCAG
Seq C2 exon
GTGCTTCACCTTTTGGGGCCCAAGATGGAAGCTGATCTGGTGAAGAAGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032604-Qars:NM_001168270:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.130
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=PU(1.2=33.3)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGATCAAGAACGAGGTGGATATGC
R:
CTTGGGCTTCTTCACCAGATCA
Band lengths:
302-670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: