BtaINT0120962 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018928 | QARS
Description
glutamine--tRNA ligase [Source:RefSeq peptide;Acc:NP_001029640]
Coordinates
chr22:51485568-51486238:+
Coord C1 exon
chr22:51485568-51485632
Coord A exon
chr22:51485633-51486184
Coord C2 exon
chr22:51486185-51486238
Length
552 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TGACTCTGGTCTCTGCTCAGGTC
3' ss Score
9.21
Exon sequences
Seq C1 exon
GAGAGGCTCGGGCTGCACTCAAGTGGGCAGATGGCAAAATGATCAAGCATGAAGTAGACATGCAG
Seq A exon
GTGGGTGCCTCTTTGAGCTGAAGCAGGCAAAGGCCCTGTCAGAATGTCGAGTCCACTGAGGGGTACACAGGGCTGGGAGGGGAAGAGAGCCTGTTCCTCTTCTCATGGTGGATAGTAGTGCCTAGGGTAGAGGGGGGAGCACCTGGCGAACAATCAAAGACCCGGGCCCCTGGGTTATGCCTAATTTGGGATGAGTTGCTTTACTCTGAACCTCAGTTTCCTCATCTTGTAAATAGGGGTGATGTGGCCTTCATCTCAGGATGCTGGCAGAGAATCACAGGAGGGTGATGGCTGAGGTAGATGGCTTATCTCGATGCTGGCCCCACAGTTCCTCTGTGTAAATGGCTGTTTCTGTTAACCTGAGCCTAATATGGACCCTCAGGAGGGAAAGAGTATTTGAGGCCACAGAAACATGTGACGAGCAGAGGTGGGATGGGCTAGGTAGGTTTTTCAAGGTGGTGCCGGTAAATAGGCCCAGGAGCCCTTTGGTGGGTGTGTGGGTGGGACAAGTCATGGTGTCCTGTCCCAGCTCTGACTCTGGTCTCTGCTCAG
Seq C2 exon
GTCCTCCATCTTCTGGGTCCCAAGACAGAGACTGATCTGGAGAAGAAGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018928:ENSBTAT00000025191:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.556
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=PD(7.4=54.5),PF0455710=tRNA_synt_1c_R2=PU(8.6=36.4)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]