RnoINT0121197 @ rn6
Intron Retention
Gene
ENSRNOG00000060912 | Qars
Description
glutaminyl-tRNA synthetase [Source:RGD Symbol;Acc:1359448]
Coordinates
chr8:117299372-117300081:+
Coord C1 exon
chr8:117299372-117299436
Coord A exon
chr8:117299437-117300027
Coord C2 exon
chr8:117300028-117300081
Length
591 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
3' ss Seq
TCTGGTATCTATCTGCTTAGGTC
3' ss Score
7.5
Exon sequences
Seq C1 exon
GAGAGGCTCGGGCTGCGCTCAGATGGGCAGATGGCAAAATGATCAAGAACGAAGTGGATATGCAG
Seq A exon
GTGGGTACCTCGCTACGTATGGTGGGTATGAGCTACAAGGATAAAGGGAAAGAGACCCTGTCCTTACTCTGACAGAGAAAGTAGAGCCCAGTGTGGGGGGGGGGTAGCACCTGACTTGTGAGGGTGAATCACTTTATTGTGAAGCTCTTTCCTCTTCTCACAAGTGCATGATGTGGCCTTTATCGATATGCTGGCAAGTGATCACAAGAGGACAACGACTGAGGTAGATTGTTGATTGTGATGCTGGGCCCATATTATTTCTCTGTAAATGGCAGCAGCTGCTTTCTGGGCCCAGGGTAAGTCCTCAGAAAGGAAAAGTATTCAAGACCAGTAGAAACATGTGAAGAAGCCAGCTGGGCAGAGGCAGGTGGATCTCAGTGAGTTCTAGCCTGGTCTACATAGTGAGTTCTAGACCAGCCAAGGCTACAATGTAAGATCCCATGTCAAACAACAAAACGTGATGAGATAGATCAGGATGGGATGGGTAGGCTGGCCAGCAGAAAGGCCTGGAAGCCCTTGGTTGGTGGGGAAGGACTCCATCAGGAGATTCTTGAGAGAAGACACCCTTGTCTCTGGTATCTATCTGCTTAG
Seq C2 exon
GTCCTCCACCTGCTGGGGCCCAAAATGGAAGCTGATCTGGAGAAGAAGCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060912:ENSRNOT00000082628:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.135
Domain overlap (PFAM):
C1:
PF0455810=tRNA_synt_1c_R1=PD(7.4=54.5),PF0455710=tRNA_synt_1c_R2=PU(8.6=36.4)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(18.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]