GgaINT0022059 @ galGal3
Intron Retention
Gene
ENSGALG00000006853 | QARS
Description
NA
Coordinates
chr12:11871212-11871468:+
Coord C1 exon
chr12:11871212-11871265
Coord A exon
chr12:11871266-11871410
Coord C2 exon
chr12:11871411-11871468
Length
145 bp
Sequences
Splice sites
5' ss Seq
AAGGTGATG
5' ss Score
5.22
3' ss Seq
TGCTGTGCTCATCCCTGCAGGCT
3' ss Score
10.68
Exon sequences
Seq C1 exon
GTGCTGCATTTGCTGGGACCAAAGACAGAAGCTGATCTGGAAAAGAAACCAAAG
Seq A exon
GTGATGCCGAGGAGGGGCCGCGTGGTGGTTCCTGAGTGGCCACAGCTGTCATCGCAGGACAGTGCTATTGCTGGGGGGGCGGGTAGAGCTGGAGGGAGGTGTGTGTGCAAAGAGGGCGTTCAGGCTGCTGTGCTCATCCCTGCAG
Seq C2 exon
GCTGCCAAGGCCCGGCCAGCCCCAGTGGAGAAGCAGAAGGCAGCCGTGGTGGAGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006853:ENSGALT00000011085:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=NA C2=0.900
Domain overlap (PFAM):
C1:
PF0455710=tRNA_synt_1c_R2=FE(18.5=100)
A:
NA
C2:
PF0455710=tRNA_synt_1c_R2=FE(20.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATTTGCTGGGACCAAAGA
R:
CATTCTCCACCACGGCTGC
Band lengths:
108-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]